Gene detail information of Glyur000068s00006816.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05230.4 | 0 | homeodomain GLABROUS 2 |
| NR | XP_007132557.1 | 0 | hypothetical protein PHAVU_011G104700g [Phaseolus vulgaris] |
| Swissprot | tr|Q94C37|HDG2_ARATH | 0 | Homeobox-leucine zipper protein HDG2 |
| trEMBL | tr|V7AKA6|V7AKA6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04551.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 64792 | 69135 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006816.1 | PF00046.24 | Homeobox | 63 | 118 | 4.90E-18 |
| Glyur000068s00006816.1 | PF01852.14 | START | 260 | 476 | 4.90E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.017 |
| SRR1783600 | control | 0.017 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.007 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.952 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.019 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.012 |
| SRR2967015 | Control (Tissue:root) | 0.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.280 |
| SRR9715740 | Leave | 2.925 |
| SRR9715741 | Leave | 3.652 |
| SRR9715739 | Root | 0.024 |
| SRR9715742 | Root | 0.908 |
| SRR9715743 | Root | 0.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.054 |
| SRR8749029 | MeJA induced 9h | 0.084 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.049 |
| SRR8400027 | Control-Root | 0.652 |