Gene detail

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Gene detail information of Glyur000068s00006826.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35830.2	2.00E-07	aconitase 1
NR	KDO62732.1	7.34E-08	hypothetical protein CISIN_1g001863mg [Citrus sinensis]
COG	NP_359805.1	1.00E-09	succinate dehydrogenase cytochrome b-556 subunit [Rickettsia conorii str. Malish 7]
Swissprot	tr\|Q42560\|ACO1_ARATH	6.00E-09	Aconitate hydratase 1
trEMBL	tr\|A0A067FH23\|A0A067FH23_CITSI	3.00E-08	Uncharacterized protein {ECO:0000313\|EMBL:KDO62732.1}

Sequence

Transcript Sequence

>Glyur000068s00006826.1
CATAAAAAAAAAATTAAACTTTCCCCATTCAATCAATGGAACTATACCGTATATTTCTGCTTAATCCAAAAAAATAAAAATAAAAAAGCAGGTGGAATTGCTAGAGTGGCACGTGGCCCGAGTTCCCGTTCGGTCTCCACACGCCCCCAATACCATACATACTACTACTAGTACTACCCCCTCGAGACCTCACCAATTCCTTTCTCTTTCTCTCGTGTCTTGTTAGTTGTTTTCTCTCAGTAAGTACTAGCCAGCCACCAGGCACTTGCTCGATTCCTCCATTTTGTTCAATCAATTGATCAGCAGCACCATGTCTTGGCTCCTCAGATCCAGCAAGGCTAAGCTTGTCTCTTCCTCCTCTTCCCTTTCTAGAACCTTCTCCTCCCTCCCCCGCTCCACCNATCATGCTGCTCTCCATCGCACCTCTCCGCCTCAGATCGGAGCCCTCCCTCAACTCTTCCACCGCACCACCACCCCTACTGCGCCTTCCGCGGGTGAAAACCCTTCCAGGGAATACATGACTGGTCTCCCCAAAGACCCAGCGAATAAGCTTGCCGGTGATTCTAATGCGATCAATTCTTTGGGATACAAGGCTTTGGGACTGGACACTAATGTGCTGGCTGGAGCTAGATATGGTTCTAGTGTTAGTGCTGCCAAGGTCCCAATGCTATTGGGAGTCAATGCTGTGATGGCAAGAAGTTTTGAGAGAGGTGTGGGTGCTGACACATTGGGATTGATTGGTCCTAGACGTTTTATGAGTGACATCCCAAGTAAAACCAGTGAGACAAATCCATCTGGTTTTCGCCCTTTATCTCCTCATCTTCCTCTTTACCAGCCCCAGGTTTCTTCAACACTTTCAATTTTCAACAGAATTGCCGGAGCTACCCTAGCCGCTGTCATCTTACTTTTTTATATGATATACATGAAAATGGGTTTGATTAGTCTCACATATGATTCATTCTACCAGTTCATGTTCTATTCATCAAAACTCAACCTACTTGCCGTTGAGATTTCTGCCTTATTCATGTCCTATCATCTGTATAGTGCAATTCGTCATTTGTTCGTGTGATGTCACAGCCACAACTCATACCTGAAAAGTATGTTTGATCCTGAGGTGGAACTTGCTTACTTCGACCATGGAGGCATACTTCCATATGTCATCAGGAGTTTCATTAAGCAATGTGAATTTGCTTTCTGTAGTTTTGTTATTATCAACTTAATAATTACAATTTAGGCAGAACTTCCATGTTTAATGCTGAACATGACTACATCTATTTTGCATCTGAAATTTCGGTGATGTTTTTTTTTCACCCCCTCAAATTGCAAGCAAGCAACTGTTGCATTTAATAAATGCATTTGAGTTTTGGTGACTCTTAAAATACATTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	107339	110668	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01681	ACO, acnA	EC:4.2.1.3	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Citrate cycle (TCA cycle)	map00020
			Glyoxylate and dicarboxylate metabolism	map00630
			Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	125.261
SRR1783600	control	115.595
SRR1783602	moderate drought stress	56.630
SRR1811619	moderate drought stress	71.230

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	88.728
DRR006520	Root Summer glycyrrhizin high producing strain	86.871
DRR006521	Root Winter glycyrrhizin high producing strain	57.808
DRR006522	Root Winter glycyrrhizin high producing strain	55.872
DRR006523	Root Summer glycyrrhizin low producing strain	61.991
DRR006524	Root Summer glycyrrhizin low producing strain	60.967
DRR006525	Leaf Summer glycyrrhizin high producing strain	64.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	63.502

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	109.604
SRR2868004	Drought Stress(Tissue:root)	83.476
SRR2967015	Control (Tissue:root)	75.994

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	53.195
SRR9715740	Leave	52.824
SRR9715741	Leave	59.133
SRR9715739	Root	64.404
SRR9715742	Root	67.435
SRR9715743	Root	67.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	85.571
SRR8749028	MeJA induced 9h	53.303
SRR8749029	MeJA induced 9h	89.424
SRR8749030	Uninduced	39.375
SRR8749031	Uninduced	31.593
SRR8749032	Uninduced	39.643

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	91.470
SRR8400027	Control-Root	84.216