Gene detail information of Glyur000068s00006828.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G05710.10aconitase 3
NRXP_003527493.10PREDICTED: aconitate hydratase, cytoplasmic-like [Glycine max]
COGYP_005443915.10aconitate hydratase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|Q9SIB9|ACO2M_ARATH0Aconitate hydratase 2, mitochondrial (Precursor)
trEMBLtr|K7KYB1|K7KYB1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G46190.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00068111267119855-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01681ACO, acnA EC:4.2.1.3 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation pathways in prokaryotesmap00720


Gene Ontology

biological_process

GO:0008152  metabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000068s00006828.1PF00330.15Aconitase1456541.30E-147
Glyur000068s00006828.1PF00694.14Aconitase_C7839111.80E-46


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.951
SRR1783600control39.002
SRR1783602moderate drought stress38.795
SRR1811619moderate drought stress38.725

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain63.750
DRR006520Root Summer glycyrrhizin high producing strain63.119
DRR006521Root Winter glycyrrhizin high producing strain78.891
DRR006522Root Winter glycyrrhizin high producing strain77.222
DRR006523Root Summer glycyrrhizin low producing strain49.404
DRR006524Root Summer glycyrrhizin low producing strain49.395
DRR006525Leaf Summer glycyrrhizin high producing strain21.755
DRR006526Leaf Summer glycyrrhizin high producing strain21.829

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)65.923
SRR2868004Drought Stress(Tissue:root)66.484
SRR2967015Control (Tissue:root)60.843

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.828
SRR9715740Leave36.264
SRR9715741Leave38.651
SRR9715739Root25.063
SRR9715742Root50.137
SRR9715743Root43.501

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.135
SRR8749028MeJA induced 9h33.048
SRR8749029MeJA induced 9h21.257
SRR8749030Uninduced21.749
SRR8749031Uninduced13.860
SRR8749032Uninduced14.889

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root56.274
SRR8400027Control-Root55.140

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved