Gene detail information of Glyur000068s00006844.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G05120.10Helicase protein with RING/U-box domain
NRXP_004506272.10PREDICTED: ATP-dependent helicase rhp16-like isoform X1 [Cicer arietinum]
COGYP_004462436.11.00E-42SNF2-like protein [Mahella australiensis 50-1 BON]
Swissprottr|Q9FNI6|SM3L2_ARATH1.00E-82Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBLtr|K7LVV9|K7LVV9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31910.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00068193430201286+


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000068s00006844.1PF00176.18SNF2_N2116301.70E-64
Glyur000068s00006844.1PF00097.20zf-C3HC46536921.60E-05
Glyur000068s00006844.1PF00271.26Helicase_C7408175.20E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.548
SRR1783600control10.577
SRR1783602moderate drought stress7.398
SRR1811619moderate drought stress7.533

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.009
DRR006520Root Summer glycyrrhizin high producing strain8.897
DRR006521Root Winter glycyrrhizin high producing strain5.036
DRR006522Root Winter glycyrrhizin high producing strain4.831
DRR006523Root Summer glycyrrhizin low producing strain11.091
DRR006524Root Summer glycyrrhizin low producing strain10.827
DRR006525Leaf Summer glycyrrhizin high producing strain10.416
DRR006526Leaf Summer glycyrrhizin high producing strain10.481

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.691
SRR2868004Drought Stress(Tissue:root)13.940
SRR2967015Control (Tissue:root)13.088

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.420
SRR9715740Leave5.414
SRR9715741Leave7.520
SRR9715739Root1.819
SRR9715742Root6.441
SRR9715743Root6.600

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h60.612
SRR8749028MeJA induced 9h48.811
SRR8749029MeJA induced 9h46.939
SRR8749030Uninduced9.390
SRR8749031Uninduced8.645
SRR8749032Uninduced10.736

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.335
SRR8400027Control-Root15.091

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved