Gene detail

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Gene detail information of Glyur000068s00006848.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G55090.1	4.00E-83	mitogen-activated protein kinase kinase kinase 15
NR	XP_004506258.1	0	PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Cicer arietinum]
COG	NP_248764.1	1.00E-24	serine/threonine protein kinase PpkA [Pseudomonas aeruginosa PAO1]
Swissprot	tr\|Q39008\|M3K1_ARATH	2.00E-47	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|G7JEQ9\|G7JEQ9_MEDTR	0	MAP kinase kinase kinase {ECO:0000313\|EMBL:AES88164.1}

Sequence

Transcript Sequence

>Glyur000068s00006848.1
ATGGATTGGAACAGAGGCCACACCATAGGCCATGGCTCATCCGCCACCGTCTCCATCGCCACCCGCAACGGCGGCGGCATCTTCGCCGTGAAGTCATCGGAGCTATCTTGTTCAGAGCCTTTGCAGAGAGAGCAGAGAATTCTATCTTCTCTATGCTGTCCTTATGTGGTTACCTACAAAGGGTGTGATATTACCATGGAGAACAACAACAAGCTCATGTACAACCTCTTCATGGAGTACATGCCATTCGGCACGCTTGTTCAGGCGACTCACCGGCACGGTGGTGGCCGGCTCGACGAGGCGGCGATCGCGTGCTATACAAGGCAAGTAGTGAAGGGGTTAGAGCATTTGCATTCAAAAGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTGATTGGTGAAGATGGAGTCAAAATTGGAGACTTTGGATGTGCCAAGAGTGTCACTGATGATTCGGCGGCAATCGGCGGCACGCCGGTGTTTATGGCGCCGGAGGTGGCGCGTGGGAGAGAACAAGGTTGTCCTAGTGATATTTGGTCACTTGGGTGCACCGTGATTGAAATGGCCACTGGTGCTTCACCATGGCCTAATGTTGTGGCAGAAGCAGACCCTATTTCGGTGCTTTACCATTTAGCATATTCCGATGTGGTGCCTGAGATTCCGTGTTTTCTGTCCGAGGAAGCAANGGATTTCTTGGGGAAGTGCTTTAGGAGGAATCCACGAGAGAGGTGGACGGCTAGTCAGCTTCTGAAGCATCCATTTCTTGGAGAGTACTTGTGTTCTTCCAATGCTAATAATAATAAACAAGTTGTGGTTGNGGAATCTAAGTCAAGTTCCCCAACGAGTATTCTTGAGCAAGGGTTCTGGAGTGATGTGGAAGAATCGGGAAGCCTTGGGAATTTGATTCACGCAAAGGGTTTTGAGAATTCTTCGCCTGCTGATAGGGTCAGAAGGCTAGCTTCGTCTTCAGGGGAACCCCGTTGGGCATGGCATCATGATGATGATGATGGTGAGAATTGGATCACAACCAGAGGGGATNAAGTTGGTGTTTTTGGCAATTGTGGGTCAGAGACAGGTTCAGCAAGTGATGAGTTGGCTCTGCAAGGGTTGGTAGAAAGCAATGTCAAAGATAGTATTAGTGGGCATTTTGGTCACAATCACATTCACAATTGTAGGGATNCTAGTGTTGTAGTTGAAGCAGACCCTATTTCGGTGCTTTACCATTTAGCATATTCCGATGTGGTGCCTGAGATTCCGTGTTTTCTGTCCGAGGAAGCAAGGGATTTCTTGGGGAAGTGCTTTAGGAGGAATCCACGAGAGAGGTGGACGGCTAGTCAGCTTCTGAAGCATCCATTTCTTGGAGAGTACTTGTGTTCTTCCAATGCTAATAATAATAAACAAGTTGTGGTTGTGGAATCTAAGTCAAGTTCCCCAACGAGTATTCTTGAGCAAGGAATCGGGAGCCTTGGGAATTTGATTCACGCAAAGGGTTTTGAGAATTCTTCGCCTGCTGATAGGGTCAGAAGGCTAGCTTCGTCTTCAGGGGAACCCCGTTGGGCATGGCATCATGATGATGATGATGGTGAGAATTGGATCACAACCAGAGGGGATAAAGTTGGTGTTTTTGGCAATTGTGGGTCAGAGACAGGTTCAGCAAGTGATGAGTTGGCTCTGCAAGGGTTGGTAGAAAGCAATGTCAAAGATAGTATTAGTGGGCATTTTGGTCACAATCACATTCACAATTGTAGGGATTCTAGTGTTGTAGTTGGTAATCTAAATTTTGAGCCAGGCATTGTGCCTAAGATGTTCATCCTTCGACATTAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00068	219626	225047	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.4.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000068s00006848.1	PF00069.20	Pkinase	5	257	5.00E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.079
SRR1783600	control	0.080
SRR1783602	moderate drought stress	0.159
SRR1811619	moderate drought stress	0.159

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.057
DRR006520	Root Summer glycyrrhizin high producing strain	0.041
DRR006521	Root Winter glycyrrhizin high producing strain	0.244
DRR006522	Root Winter glycyrrhizin high producing strain	0.219
DRR006523	Root Summer glycyrrhizin low producing strain	0.302
DRR006524	Root Summer glycyrrhizin low producing strain	0.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.417
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.414

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.216
SRR2868004	Drought Stress(Tissue:root)	2.969
SRR2967015	Control (Tissue:root)	2.028

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	2.792
SRR9715740	Leave	0.429
SRR9715741	Leave	2.016
SRR9715739	Root	0.673
SRR9715742	Root	1.492
SRR9715743	Root	0.921

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.324
SRR8749028	MeJA induced 9h	13.121
SRR8749029	MeJA induced 9h	13.610
SRR8749030	Uninduced	3.333
SRR8749031	Uninduced	1.380
SRR8749032	Uninduced	1.593

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.355
SRR8400027	Control-Root	1.429