Gene detail information of Glyur000068s00006877.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52450.1 | 6.00E-108 | plant U-box 22 |
| NR | XP_007132500.1 | 0 | hypothetical protein PHAVU_011G099400g [Phaseolus vulgaris] |
| COG | YP_001957952.1 | 1.00E-08 | hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9SVC6|PUB22_ARATH | 7.00E-131 | E3 ubiquitin-protein ligase PUB22 |
| trEMBL | tr|V7AG07|V7AG07_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW04494.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00068 | 423331 | 424557 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000068s00006877.1 | PF04564.10 | U-box | 6 | 76 | 8.40E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.135 |
| SRR1783600 | control | 0.150 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.417 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.347 |
| SRR2967015 | Control (Tissue:root) | 10.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.322 |
| SRR9715740 | Leave | 0.052 |
| SRR9715741 | Leave | 0.327 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.055 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.477 |
| SRR8400027 | Control-Root | 0.907 |