Gene detail

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Gene detail information of Glyur000069s00004025.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05090.2	0	Transducin/WD40 repeat-like superfamily protein
NR	XP_004494664.1	0	PREDICTED: WD repeat-containing protein 48-like isoform X1 [Cicer arietinum]
COG	NP_487506.1	1.00E-28	hypothetical protein alr3466 [Nostoc sp. PCC 7120]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	7.00E-18	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|K7KGT9\|K7KGT9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G40360.2}

Sequence

Transcript Sequence

>Glyur000069s00004025.1
ATGTGTCTACAGAACACTCTCTCTCTGAAGTTGAAACCTGAGCTAAGCAACCAGGCACAAAAGTGCTTCAAATTCATCACTGATCACGTGTCTGCAATGCACCGAGTGGGTAGTGCGGGTAACACAAACAATTCAAGTCGTCCTCGAAAGGAGAAGAGATTAACATACGTGTTGAATGATTCTGATGACACAAAGCACTGTGCAGGCATAAATTGTCTGGCCCTACTTACGTCTGCAGCATCTGATGGGTCTGATTATCTCTTTACTGGAAGCCGTGATGGCAGGCTAAAACGATGGGCACTAGCTGAGGATGCAGCAACATGCTCTNCAACCTTTGAATCTCATGTGGACTGGGTTAATGATGCTGTCCTTGTTGGTGATAATACACTTGTTTCTTGTTCTTCAGATACGACCCTTAAGACATGGAGTGCTCTGTCCAATGGAACTTGTACTAGGACGCTCCGCCAACACTCCGATTATGTTACTTGCCTTGCAGCAGGAGGAAAAAATAGCAATATTGTTGCCTCTGGTGGCCTTGGCGGGGAGGTTTTTATATGGGATATCGAAGCTGCATTTGCTCCAGTCTCTAAGTCCAACGATGCTATGGTTGATGAATCCTCAAATGGTATGAATTGTTCTGGCAACTCACTACCCTTGACAAGCTTACGTAATATCAGCTCAAGCAACAATATATCNGTGCACACTACTCAAACTCAAGGGTACATTCCAATTGCTGCCAAAGGCCATAAGGATTCNGTTTATGCGTTGGCAATGAATGAAGGTGGAACAATTCTTGTCTCTGGTGGCACAGAAAAGGTTGTCCGTGTTTGGGACACAAGATCAGGATCAAAGATTCTAAAGCTTAAAGGGCATACAGATAATGTCAGGGCCCTGCTTCTGGATCCTAATGGCAGGTATTGCTTATCAGGATCTTCAGACTCTATGATAAGGCTTTGGGATATAGGTCAGCAGAGATGTTTGCATTCTTATGCAGTTCATACGGATTCTGTATGGGCACTTGCCAGCACCCCAACATTCAGTCATGTTTATAGTGGTGGGAGAGACTTTTCATTATACTTGACAGACTTGCAAACAAGAGAGAGTAGTTTGCTTTGCACTGGCGAGCACCCTATTCTTCAATTGGCTTTGCACAATGACAGCATTTGGGTTGCATCAACGGATTCTTCAGTTCATAGATGGCCTGTTGAAGGAAACAACCCTCAAAAGATTTTCCAAAGAGGCAATTCCTTTTTAGCTGGAAACCTATCCTTTTCAAGAGCAAGGGTGTCACTAGAAGGATCTACCCCTGTTCCTATATATAAAGAACCTACCTTGACTATCACGGGCACCCCGGGAATTGTGCAACATGAAGTTTTAAATAATAAGAGGCATGTGCTGACGAAGGATACATCTGGTTCAGTGAAGCTGTGGGAGGTTACCAAAGGTGTTGTGATTGAAGATTATGGAAAGGTTTCATTTAAGGAGAAAAAGGAAGAGCTATTTGAGATGGTAAGCATTCCTGCATGGTTCACAGTGGATACTAGGCTTGGAAGTTTGTCAGTCCATTTGGACACTCCCCAATGCTTTTCTGCAGAGATGTATTCGGCAGATCTTAACATTGTAGGCAAGCCTGAAGATGATAAGGTTAATTTGGGTCGAGAAACCCTTAAAGGACTATTGGTTCATTGGTTGAGAAAACGAAAACAAAGAATGGGATCTCCAGCTCCAGCTAATGGGGAATTATTATCTGGAAAAGATGTTGCTGCTAGAAGTCTTATTCATTCAAGAGTTGAGGTTGATGGTAGTTCTGAGAATGATGCTATGGTCTATCCTCCATTTGAATTCTCTGTTGTTTCCCCTCCTTCGATCGTTACTGAGGGCACTCATGGAGGTCCGTGGAGAAAAAAAATTACTGATTTAGATGGGACTGAGGATGAGAAAGACTTCCCCTGGTGGTGTCTAGACTGCGTTCTGAATAATCGGTTACCTCCCAGAGAAAATACCAAATGCAGTTTCTATTTGCATCCATGTGAAGGCTCTACAGTCCAGATCCTCACACAAGGGAAGCTAAGTGCCCCACGTATTTTAAGAATTCACAAAGTTATTAATTATGTGATAGAGAAGATGGTGCTCGATAAACCTTTGGATAGTTTACATGCTGATGGTAGTTTTACCCCTGGACTTGCTGGGCCACAGTCACAGCACCAAGCAGTTGGGGATGGATCTTTCCGATCTGGGTTCAAACCATGGCAAAAGCTTAGACCTTCAATTGAAATATTGTGCAACAACCAGGCAAGTTTTCTTGCGATTGTGTAAAATACCTTGAGCACCTGTTCTTCTTCTTGGGTTGCCTGCATTGATCGGTGGCATTATAAGAATTTTGTAAATTCTGAGTTCTCATTTATCACCAAATTTAGTAACATTCTCCGAACCTGCTTGGATAGTTTTTCTTTAGTGGAGAGCTGTTACTATAAATTTTGAATTATATGTAGCTGGCGTGCATACTTTTGATGAACATGGCGACGGAGTCATAGGTGGTCTGCATCTGGCATG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00069	3190	12781	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000069s00004025.1	PF00400.27	WD40	66	99	0.018
Glyur000069s00004025.1	PF00400.27	WD40	107	143	0.0022
Glyur000069s00004025.1	PF00400.27	WD40	148	187	0.00053
Glyur000069s00004025.1	PF00400.27	WD40	247	278	0.0002
Glyur000069s00004025.1	PF00400.27	WD40	285	320	3.00E-09
Glyur000069s00004025.1	PF00400.27	WD40	325	360	0.008
Glyur000069s00004025.1	PF11816.3	DUF3337	456	764	9.40E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.152
SRR1783600	control	18.151
SRR1783602	moderate drought stress	19.672
SRR1811619	moderate drought stress	19.350

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.858
DRR006520	Root Summer glycyrrhizin high producing strain	24.312
DRR006521	Root Winter glycyrrhizin high producing strain	32.119
DRR006522	Root Winter glycyrrhizin high producing strain	32.506
DRR006523	Root Summer glycyrrhizin low producing strain	25.726
DRR006524	Root Summer glycyrrhizin low producing strain	25.734
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.274

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	48.528
SRR2868004	Drought Stress(Tissue:root)	50.762
SRR2967015	Control (Tissue:root)	52.603

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	27.328
SRR9715740	Leave	25.958
SRR9715741	Leave	38.459
SRR9715739	Root	11.088
SRR9715742	Root	27.424
SRR9715743	Root	24.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.054
SRR8749028	MeJA induced 9h	41.606
SRR8749029	MeJA induced 9h	28.915
SRR8749030	Uninduced	18.938
SRR8749031	Uninduced	18.522
SRR8749032	Uninduced	15.587

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	43.060
SRR8400027	Control-Root	40.871