Gene detail information of Glyur000069s00004035.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08830.21.00E-60copper/zinc superoxide dismutase 1
NRABF51006.13.55E-92Cu-Zn superoxide dismutase [Arachis hypogaea]
COGYP_003290884.18.00E-36Superoxide dismutase [Rhodothermus marinus DSM 4252]
Swissprottr|Q7M1R5|SODC_SOYBN2.00E-92Superoxide dismutase [Cu-Zn]
trEMBLtr|Q1HDS7|Q1HDS7_ARAHY1.00E-92Superoxide dismutase [Cu-Zn] {ECO:0000256|RuleBase:RU000393}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000696626269527-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04565SOD1 EC:1.15.1.1 Peroxisome map04146
Longevity regulating pathway - multiple speciesmap04213
Amyotrophic lateral sclerosis (ALS)map05014
Huntington's diseasemap05016
Prion diseasesmap05020


Gene Ontology

biological_process

GO:0006801  superoxide metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004784  superoxide dismutase activity

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000069s00004035.1PF00080.15Sod_Cu51466.50E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control499.068
SRR1783600control501.186
SRR1783602moderate drought stress354.360
SRR1811619moderate drought stress353.018

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain501.868
DRR006520Root Summer glycyrrhizin high producing strain496.180
DRR006521Root Winter glycyrrhizin high producing strain685.246
DRR006522Root Winter glycyrrhizin high producing strain666.606
DRR006523Root Summer glycyrrhizin low producing strain346.355
DRR006524Root Summer glycyrrhizin low producing strain346.276
DRR006525Leaf Summer glycyrrhizin high producing strain56.790
DRR006526Leaf Summer glycyrrhizin high producing strain56.069

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)591.770
SRR2868004Drought Stress(Tissue:root)516.314
SRR2967015Control (Tissue:root)495.751

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave631.868
SRR9715740Leave616.148
SRR9715741Leave681.629
SRR9715739Root1140.006
SRR9715742Root745.514
SRR9715743Root835.004

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.499
SRR8749028MeJA induced 9h89.807
SRR8749029MeJA induced 9h77.554
SRR8749030Uninduced76.191
SRR8749031Uninduced46.179
SRR8749032Uninduced50.311

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root342.910
SRR8400027Control-Root364.992

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved