Gene detail information of Glyur000069s00004042.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06350.12.00E-173dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
NRCAN60563.10hypothetical protein VITISV_034026 [Vitis vinifera]
COGYP_004177782.12.00E-84shikimate 5-dehydrogenase [Isosphaera pallida ATCC 43644]
Swissprottr|Q9SQT8|DHQSD_ARATH0Shikimate dehydrogenase (Precursor)
trEMBLtr|A5ATW2|A5ATW2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CAN60563.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00069105513116013+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13832aroDE, DHQ-SDH EC:4.2.1.10 1.1.1.25 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003855  3-dehydroquinate dehydratase activity

GO:0004764  shikimate 3-dehydrogenase (NADP+) activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000069s00004042.2PF01487.10DHquinase_I341747.80E-31
Glyur000069s00004042.2PF08501.6Shikimate_dh_N2363161.80E-22
Glyur000069s00004042.2PF01487.10DHquinase_I4656831.40E-70
Glyur000069s00004042.2PF08501.6Shikimate_dh_N6967772.90E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.938
SRR1783600control2.991
SRR1783602moderate drought stress4.793
SRR1811619moderate drought stress4.643

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.542
DRR006520Root Summer glycyrrhizin high producing strain2.621
DRR006521Root Winter glycyrrhizin high producing strain1.038
DRR006522Root Winter glycyrrhizin high producing strain1.001
DRR006523Root Summer glycyrrhizin low producing strain3.989
DRR006524Root Summer glycyrrhizin low producing strain4.057
DRR006525Leaf Summer glycyrrhizin high producing strain2.992
DRR006526Leaf Summer glycyrrhizin high producing strain2.927

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.761
SRR2868004Drought Stress(Tissue:root)14.537
SRR2967015Control (Tissue:root)19.444

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.322
SRR9715740Leave6.170
SRR9715741Leave13.871
SRR9715739Root1.080
SRR9715742Root4.485
SRR9715743Root3.389

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.202
SRR8749028MeJA induced 9h5.261
SRR8749029MeJA induced 9h3.980
SRR8749030Uninduced3.636
SRR8749031Uninduced4.248
SRR8749032Uninduced3.272

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.734
SRR8400027Control-Root7.906

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved