Gene detail information of Glyur000069s00004073.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05200.1 | 6.00E-54 | RING/U-box superfamily protein |
| NR | XP_004494634.1 | 0 | PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Cicer arietinum] |
| Swissprot | tr|Q8RXX9|ATL6_ARATH | 7.00E-82 | E3 ubiquitin-protein ligase ATL6 (Precursor) |
| trEMBL | tr|Q2HTN3|Q2HTN3_MEDTR | 0 | Zinc finger, RING-type {ECO:0000313|EMBL:ABD32383.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00069 | 308677 | 309795 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000069s00004073.1 | PF13639.1 | zf-RING_2 | 121 | 164 | 6.40E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.628 |
| SRR1783600 | control | 19.123 |
| SRR1783602 | moderate drought stress | 18.057 |
| SRR1811619 | moderate drought stress | 18.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.980 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.436 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.946 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.091 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 43.479 |
| SRR2868004 | Drought Stress(Tissue:root) | 78.094 |
| SRR2967015 | Control (Tissue:root) | 57.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 92.366 |
| SRR9715740 | Leave | 59.231 |
| SRR9715741 | Leave | 78.780 |
| SRR9715739 | Root | 98.267 |
| SRR9715742 | Root | 29.536 |
| SRR9715743 | Root | 41.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.619 |
| SRR8749028 | MeJA induced 9h | 35.296 |
| SRR8749029 | MeJA induced 9h | 11.505 |
| SRR8749030 | Uninduced | 2.567 |
| SRR8749031 | Uninduced | 4.450 |
| SRR8749032 | Uninduced | 10.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.578 |
| SRR8400027 | Control-Root | 41.021 |