Gene detail information of Glyur000069s00004086.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G09010.10glycoside hydrolase family 2 protein
NRXP_004494621.10PREDICTED: mannosylglycoprotein endo-beta-mannosidase-like [Cicer arietinum]
COGYP_007226090.10beta-galactosidase/beta-glucuronidase [Echinicola vietnamensis DSM 17526]
Swissprottr|Q5H7P5|EBM_LILLO0Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit
trEMBLtr|I1NBZ6|I1NBZ6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G42370.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00069370951377426+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0033947  mannosylglycoprotein endo-beta-mannosidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000069s00004086.1PF02837.13Glyco_hydro_2_N361541.90E-09
Glyur000069s00004086.1PF00703.16Glyco_hydro_22113294.30E-10
Glyur000069s00004086.1PF02836.12Glyco_hydro_2_C3444742.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.082
SRR1783600control14.442
SRR1783602moderate drought stress13.307
SRR1811619moderate drought stress13.686

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.711
DRR006520Root Summer glycyrrhizin high producing strain11.410
DRR006521Root Winter glycyrrhizin high producing strain10.511
DRR006522Root Winter glycyrrhizin high producing strain10.193
DRR006523Root Summer glycyrrhizin low producing strain8.643
DRR006524Root Summer glycyrrhizin low producing strain8.767
DRR006525Leaf Summer glycyrrhizin high producing strain5.088
DRR006526Leaf Summer glycyrrhizin high producing strain5.030

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.033
SRR2868004Drought Stress(Tissue:root)22.202
SRR2967015Control (Tissue:root)19.470

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.619
SRR9715740Leave7.256
SRR9715741Leave6.613
SRR9715739Root2.257
SRR9715742Root9.806
SRR9715743Root8.621

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.232
SRR8749028MeJA induced 9h10.437
SRR8749029MeJA induced 9h7.024
SRR8749030Uninduced4.903
SRR8749031Uninduced4.187
SRR8749032Uninduced3.533

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.789
SRR8400027Control-Root23.312

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved