Gene detail information of Glyur000070s00008055.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10780.1 | 2.00E-153 | F-box/RNI-like superfamily protein |
| NR | XP_003525015.1 | 0 | PREDICTED: F-box protein At1g10780-like [Glycine max] |
| Swissprot | tr|Q9SAC4|FB2_ARATH | 0 | F-box protein At1g10780 |
| trEMBL | tr|I1K4B3|I1K4B3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 150877 | 152411 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008055.1 | PF12937.2 | F-box-like | 18 | 52 | 3.70E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.786 |
| SRR1783600 | control | 1.613 |
| SRR1783602 | moderate drought stress | 0.635 |
| SRR1811619 | moderate drought stress | 0.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.079 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.083 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.081 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.246 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.166 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.121 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.339 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.235 |
| SRR2967015 | Control (Tissue:root) | 3.136 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.904 |
| SRR9715740 | Leave | 1.927 |
| SRR9715741 | Leave | 1.029 |
| SRR9715739 | Root | 2.507 |
| SRR9715742 | Root | 1.024 |
| SRR9715743 | Root | 2.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.628 |
| SRR8749028 | MeJA induced 9h | 2.003 |
| SRR8749029 | MeJA induced 9h | 2.060 |
| SRR8749030 | Uninduced | 0.330 |
| SRR8749031 | Uninduced | 0.116 |
| SRR8749032 | Uninduced | 0.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.392 |
| SRR8400027 | Control-Root | 3.822 |