Gene detail information of Glyur000070s00008065.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G30620.20NAD(P)-binding Rossmann-fold superfamily protein
NRAET04475.20UDP-D-glucose/UDP-D-galactose 4-epimerase [Medicago truncatula]
COGYP_005445125.11.00E-93UDP-glucose 4-epimerase [Phycisphaera mikurensis NBRC 102666]
Swissprottr|Q9SA77|ARAE1_ARATH0UDP-arabinose 4-epimerase 1
trEMBLtr|G7L9K1|G7L9K1_MEDTR0UDP-D-glucose/UDP-D-galactose 4-epimerase {ECO:0000313|EMBL:AET04475.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00070206005212289+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12448UXE, uxe EC:5.1.3.5 Amino sugar and nucleotide sugar metabolism map00520


Gene Ontology

biological_process

GO:0006012  galactose metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0003978  UDP-glucose 4-epimerase activity

GO:0050662  coenzyme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000070s00008065.1PF01370.16Epimerase733344.80E-50
Glyur000070s00008065.1PF13950.1Epimerase_Csub3484094.30E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.650
SRR1783600control40.504
SRR1783602moderate drought stress29.959
SRR1811619moderate drought stress29.670

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain121.289
DRR006520Root Summer glycyrrhizin high producing strain119.448
DRR006521Root Winter glycyrrhizin high producing strain59.208
DRR006522Root Winter glycyrrhizin high producing strain57.167
DRR006523Root Summer glycyrrhizin low producing strain103.670
DRR006524Root Summer glycyrrhizin low producing strain104.263
DRR006525Leaf Summer glycyrrhizin high producing strain20.092
DRR006526Leaf Summer glycyrrhizin high producing strain19.920

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.485
SRR2868004Drought Stress(Tissue:root)49.776
SRR2967015Control (Tissue:root)48.490

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.969
SRR9715740Leave22.656
SRR9715741Leave30.077
SRR9715739Root59.264
SRR9715742Root83.863
SRR9715743Root74.993

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.744
SRR8749028MeJA induced 9h44.362
SRR8749029MeJA induced 9h57.733
SRR8749030Uninduced51.528
SRR8749031Uninduced40.160
SRR8749032Uninduced33.236

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root82.155
SRR8400027Control-Root73.500

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved