Gene detail information of Glyur000070s00008067.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30810.2 | 0 | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
| NR | XP_006580234.1 | 0 | PREDICTED: probable lysine-specific demethylase JMJ14-like isoform X1 [Glycine max] |
| Swissprot | tr|F4I6G4|JMJ18_ARATH | 0 | Lysine-specific demethylase JMJ18 |
| trEMBL | tr|K7KQR0|K7KQR0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30470.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 235438 | 240198 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008067.1 | PF02375.12 | JmjN | 73 | 106 | 3.80E-16 |
| Glyur000070s00008067.1 | PF02373.17 | JmjC | 309 | 439 | 5.00E-40 |
| Glyur000070s00008067.1 | PF02928.11 | zf-C5HC2 | 546 | 598 | 2.50E-13 |
| Glyur000070s00008067.1 | PF05964.9 | FYRN | 846 | 892 | 2.40E-10 |
| Glyur000070s00008067.1 | PF05965.9 | FYRC | 897 | 983 | 1.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.376 |
| SRR1783600 | control | 0.376 |
| SRR1783602 | moderate drought stress | 0.292 |
| SRR1811619 | moderate drought stress | 0.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.287 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.284 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.327 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.300 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.621 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.381 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.128 |
| SRR2967015 | Control (Tissue:root) | 0.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.124 |
| SRR9715740 | Leave | 1.473 |
| SRR9715741 | Leave | 1.050 |
| SRR9715739 | Root | 0.087 |
| SRR9715742 | Root | 0.196 |
| SRR9715743 | Root | 0.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.417 |
| SRR8749028 | MeJA induced 9h | 0.060 |
| SRR8749029 | MeJA induced 9h | 0.105 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.068 |
| SRR8749032 | Uninduced | 0.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.137 |
| SRR8400027 | Control-Root | 2.409 |