Gene detail information of Glyur000070s00008075.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G05420.20damaged DNA binding protein 1A
NRXP_003525024.10PREDICTED: DNA damage-binding protein 1-like isoform 1 [Glycine max]
Swissprottr|Q6QNU4|DDB1_SOLLC0DNA damage-binding protein 1
trEMBLtr|I1K4D0|I1K4D0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G30530.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00070283140292096-


Gene family

Gene familysubfamily
Ubiquitin FamilyDDB1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005634  nucleus


molecular_function

GO:0003676  nucleic acid binding

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000070s00008075.1PF10433.4MMS1_N763025.40E-21
Glyur000070s00008075.1PF10433.4MMS1_N3054531.90E-27
Glyur000070s00008075.1PF03178.10CPSF_A6589719.10E-85


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.617
SRR1783600control41.871
SRR1783602moderate drought stress52.274
SRR1811619moderate drought stress52.360

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.492
DRR006520Root Summer glycyrrhizin high producing strain49.949
DRR006521Root Winter glycyrrhizin high producing strain50.440
DRR006522Root Winter glycyrrhizin high producing strain48.744
DRR006523Root Summer glycyrrhizin low producing strain43.599
DRR006524Root Summer glycyrrhizin low producing strain43.080
DRR006525Leaf Summer glycyrrhizin high producing strain20.697
DRR006526Leaf Summer glycyrrhizin high producing strain20.497

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.971
SRR2868004Drought Stress(Tissue:root)50.715
SRR2967015Control (Tissue:root)50.792

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.913
SRR9715740Leave30.726
SRR9715741Leave27.853
SRR9715739Root10.689
SRR9715742Root44.866
SRR9715743Root36.443

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h54.915
SRR8749028MeJA induced 9h33.642
SRR8749029MeJA induced 9h35.481
SRR8749030Uninduced13.698
SRR8749031Uninduced14.118
SRR8749032Uninduced14.793

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root53.765
SRR8400027Control-Root52.648

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved