Gene detail information of Glyur000070s00008078.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34650.1 | 9.00E-150 | Protein kinase superfamily protein |
| NR | XP_004504155.1 | 0 | PREDICTED: protein kinase PINOID-like [Cicer arietinum] |
| COG | YP_003302268.1 | 4.00E-20 | serine/threonine protein kinase [Thermomonospora curvata DSM 43183] |
| Swissprot | tr|O64682|PID_ARATH | 0 | Protein kinase PINOID |
| trEMBL | tr|G7L9M4|G7L9M4_MEDTR | 0 | Serine/Threonine kinase family protein {ECO:0000313|EMBL:AET04498.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00070 | 324161 | 325675 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.2.6 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000070s00008078.1 | PF00069.20 | Pkinase | 86 | 250 | 4.70E-33 |
| Glyur000070s00008078.1 | PF00069.20 | Pkinase | 312 | 419 | 1.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.886 |
| SRR1783600 | control | 5.863 |
| SRR1783602 | moderate drought stress | 4.631 |
| SRR1811619 | moderate drought stress | 4.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.017 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.978 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.108 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.087 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.735 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.369 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.827 |
| SRR2967015 | Control (Tissue:root) | 1.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.455 |
| SRR9715740 | Leave | 0.821 |
| SRR9715741 | Leave | 0.633 |
| SRR9715739 | Root | 5.209 |
| SRR9715742 | Root | 6.372 |
| SRR9715743 | Root | 4.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.542 |
| SRR8749028 | MeJA induced 9h | 2.208 |
| SRR8749029 | MeJA induced 9h | 3.194 |
| SRR8749030 | Uninduced | 0.157 |
| SRR8749031 | Uninduced | 0.054 |
| SRR8749032 | Uninduced | 0.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.840 |
| SRR8400027 | Control-Root | 4.331 |