Gene detail information of Glyur000071s00005236.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42350.1 | 1.00E-22 | RING/U-box superfamily protein |
| NR | XP_003543013.1 | 1.02E-88 | PREDICTED: E3 ubiquitin-protein ligase ATL41-like [Glycine max] |
| Swissprot | tr|Q9SLC3|ATL41_ARATH | 7.00E-29 | E3 ubiquitin-protein ligase ATL41 |
| trEMBL | tr|I1M1W8|I1M1W8_SOYBN | 4.00E-89 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G30600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 78779 | 79408 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000071s00005236.1 | PF13639.1 | zf-RING_2 | 97 | 140 | 2.20E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.116 |
| SRR1783600 | control | 0.117 |
| SRR1783602 | moderate drought stress | 0.181 |
| SRR1811619 | moderate drought stress | 0.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.398 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.690 |
| SRR2967015 | Control (Tissue:root) | 0.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.319 |
| SRR9715740 | Leave | 1.177 |
| SRR9715741 | Leave | 0.311 |
| SRR9715739 | Root | 0.411 |
| SRR9715742 | Root | 0.448 |
| SRR9715743 | Root | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.106 |
| SRR8749029 | MeJA induced 9h | 0.069 |
| SRR8749030 | Uninduced | 1.158 |
| SRR8749031 | Uninduced | 5.257 |
| SRR8749032 | Uninduced | 2.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.206 |
| SRR8400027 | Control-Root | 0.967 |