Gene detail information of Glyur000071s00005255.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36230.16.00E-113Aldolase-type TIM barrel family protein
NRXP_004485858.12.66E-176PREDICTED: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic-like [Cicer arietinum]
COGYP_002605709.18.00E-991-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [Desulfobacterium autotrophicum HRM2]
Swissprottr|O82782|HIS3_ARATH3.00E-1471-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic (Precursor)
trEMBLtr|G7IFI7|G7IFI7_MEDTR4.00E-171Aldolase-type TIM barrel family protein {ECO:0000313|EMBL:AES63938.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00071160734165851+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01814hisA EC:5.3.1.16 Biosynthesis of amino acids map01230
Histidine metabolismmap00340


Gene Ontology

biological_process

GO:0000105  histidine biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0003949  1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000071s00005255.1PF00977.16His_biosynth772801.50E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.863
SRR1783600control22.212
SRR1783602moderate drought stress14.551
SRR1811619moderate drought stress14.817

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.492
DRR006520Root Summer glycyrrhizin high producing strain18.206
DRR006521Root Winter glycyrrhizin high producing strain12.558
DRR006522Root Winter glycyrrhizin high producing strain12.132
DRR006523Root Summer glycyrrhizin low producing strain15.328
DRR006524Root Summer glycyrrhizin low producing strain14.454
DRR006525Leaf Summer glycyrrhizin high producing strain9.178
DRR006526Leaf Summer glycyrrhizin high producing strain8.372

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.621
SRR2868004Drought Stress(Tissue:root)19.096
SRR2967015Control (Tissue:root)20.214

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.235
SRR9715740Leave8.595
SRR9715741Leave5.232
SRR9715739Root24.522
SRR9715742Root11.374
SRR9715743Root14.775

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.116
SRR8749028MeJA induced 9h17.382
SRR8749029MeJA induced 9h19.612
SRR8749030Uninduced9.043
SRR8749031Uninduced7.645
SRR8749032Uninduced8.375

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.518
SRR8400027Control-Root24.733

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved