Gene detail information of Glyur000071s00005258.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G33880.1 | 2.00E-52 | homeobox-3 |
| NR | ACL11801.1 | 6.36E-177 | WOX9-like protein [Phaseolus coccineus] |
| Swissprot | tr|Q6X7J5|WOX8_ARATH | 2.00E-49 | WUSCHEL-related homeobox 8 |
| trEMBL | tr|B8YI24|B8YI24_PHACN | 2.00E-177 | WOX9-like protein {ECO:0000313|EMBL:ACL11801.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00071 | 174878 | 177614 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000071s00005258.1 | PF00046.24 | Homeobox | 56 | 116 | 3.10E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.107 |
| SRR1783600 | control | 0.135 |
| SRR1783602 | moderate drought stress | 1.118 |
| SRR1811619 | moderate drought stress | 1.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.318 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.389 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.151 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.158 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.204 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.067 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.025 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.098 |
| SRR9715740 | Leave | 0.093 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.243 |
| SRR9715742 | Root | 0.384 |
| SRR9715743 | Root | 0.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.260 |
| SRR8749028 | MeJA induced 9h | 0.488 |
| SRR8749029 | MeJA induced 9h | 0.270 |
| SRR8749030 | Uninduced | 0.415 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.105 |
| SRR8400027 | Control-Root | 0.280 |