Gene detail information of Glyur000072s00008105.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32900.10UDP-Glycosyltransferase superfamily protein
NRXP_004514923.10PREDICTED: granule-bound starch synthase 1, chloroplastic/amyloplastic-like [Cicer arietinum]
COGYP_005367199.13.00E-93glycogen synthase [Corallococcus coralloides DSM 2259]
Swissprottr|Q00775|SSG1_SOLTU0Granule-bound starch synthase 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|B2CP02|B2CP02_LOTJA0Starch synthase, chloroplastic/amyloplastic {ECO:0000256|RuleBase:RU361232}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000724521949658-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT5


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13679WAXY EC:2.4.1.242 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009250  glucan biosynthetic process


molecular_function

GO:0009011  starch synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000072s00008105.1PF08323.6Glyco_transf_5883472.80E-75
Glyur000072s00008105.1PF00534.15Glycos_transf_14045245.30E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.014
SRR1783600control0.030
SRR1783602moderate drought stress0.091
SRR1811619moderate drought stress0.091

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.087
DRR006520Root Summer glycyrrhizin high producing strain0.085
DRR006521Root Winter glycyrrhizin high producing strain0.045
DRR006522Root Winter glycyrrhizin high producing strain0.041
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain58.022
DRR006526Leaf Summer glycyrrhizin high producing strain57.464

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.917
SRR2868004Drought Stress(Tissue:root)2.703
SRR2967015Control (Tissue:root)0.203

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave91.315
SRR9715740Leave93.416
SRR9715741Leave69.789
SRR9715739Root0.160
SRR9715742Root0.236
SRR9715743Root0.509

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.524
SRR8400027Control-Root2.063

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved