Gene detail information of Glyur000072s00008107.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G00800.10transducin family protein / WD-40 repeat family protein
NRXP_004514922.10PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Cicer arietinum]
trEMBLtr|I1KHP6|I1KHP6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G05560.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000725280063237+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000072s00008107.1PF12816.2Vps894811337.90E-56
Glyur000072s00008107.1PF00637.15Clathrin144715185.70E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.508
SRR1783600control10.567
SRR1783602moderate drought stress12.513
SRR1811619moderate drought stress12.428

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.850
DRR006520Root Summer glycyrrhizin high producing strain7.885
DRR006521Root Winter glycyrrhizin high producing strain4.722
DRR006522Root Winter glycyrrhizin high producing strain4.619
DRR006523Root Summer glycyrrhizin low producing strain6.483
DRR006524Root Summer glycyrrhizin low producing strain6.480
DRR006525Leaf Summer glycyrrhizin high producing strain4.040
DRR006526Leaf Summer glycyrrhizin high producing strain4.047

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.028
SRR2868004Drought Stress(Tissue:root)19.773
SRR2967015Control (Tissue:root)19.077

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.987
SRR9715740Leave8.726
SRR9715741Leave11.564
SRR9715739Root1.150
SRR9715742Root12.985
SRR9715743Root9.856

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.074
SRR8749028MeJA induced 9h6.455
SRR8749029MeJA induced 9h3.358
SRR8749030Uninduced3.616
SRR8749031Uninduced2.570
SRR8749032Uninduced1.756

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.051
SRR8400027Control-Root19.051

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved