Gene detail information of Glyur000072s00008124.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01060.3 | 2.00E-61 | Homeodomain-like superfamily protein |
| NR | KHN15871.1 | 0 | Protein LHY [Glycine soja] |
| Swissprot | tr|Q6R0H1|LHY_ARATH | 1.00E-138 | Protein LHY |
| trEMBL | tr|I1MKB1|I1MKB1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G01980.6} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 154425 | 162942 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008124.2 | PF00249.26 | Myb_DNA-binding | 24 | 68 | 6.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 47.074 |
| SRR1783600 | control | 47.023 |
| SRR1783602 | moderate drought stress | 68.461 |
| SRR1811619 | moderate drought stress | 67.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.198 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 30.710 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 48.829 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 47.869 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.656 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.797 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 130.707 |
| SRR2868004 | Drought Stress(Tissue:root) | 195.830 |
| SRR2967015 | Control (Tissue:root) | 79.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 161.236 |
| SRR9715740 | Leave | 150.548 |
| SRR9715741 | Leave | 201.112 |
| SRR9715739 | Root | 5.958 |
| SRR9715742 | Root | 54.404 |
| SRR9715743 | Root | 49.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 93.763 |
| SRR8749028 | MeJA induced 9h | 168.039 |
| SRR8749029 | MeJA induced 9h | 100.430 |
| SRR8749030 | Uninduced | 246.077 |
| SRR8749031 | Uninduced | 151.566 |
| SRR8749032 | Uninduced | 154.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 108.544 |
| SRR8400027 | Control-Root | 75.588 |