Gene detail

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Gene detail information of Glyur000072s00008127.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46850.1	1.00E-148	Protein kinase superfamily protein
NR	KEH18554.1	0	wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
Swissprot	tr\|Q8S8N4\|Y2685_ARATH	0	Probably inactive receptor-like protein kinase At2g46850 (Precursor)
trEMBL	tr\|A0A072TM14\|A0A072TM14_MEDTR	0	Wall-associated receptor kinase galacturonan-binding protein {ECO:0000313\|EMBL:KEH18554.1}

Sequence

Transcript Sequence

>Glyur000072s00008127.1
ATGGCTTCTTTTGTTACCACTGTTAGTTTTGGATTACTTCTTTTGTTCTTCTTGCCTCTNACTTGTTGTTCCCAGTTGCAACCCACTTTGCCTCCAAACTCTTGCAATGAGACATGTGGGAAACTCCATGTTCCTTTCCCTTTCTATGTCAACCCTTCATGTGTGTCACTGTCCAGTGCTTTCCACCTCTCTTGCTCCTCAAACTCCTCNACCCTTTTGCTCAAAATTGGGTCACAAAGCTACCCAGTTTTGGAGTTCTTCTCAGATGGTTTGTTAGTGGACTTTCCAGGCACATCCTCCTGTCGCCAGTACAATGACTTGAACTCATTTGGTGAGAGTTCTGGTGTTGGTGTTGAAGGGAAGAACAANAACAAGAACTACTACTTTGGTATCTCAGTTGACAATGTTATTGGCCTCTATGACTGTGAGGACTCTTCTCTTTGCAAAGCAGATTGTGAAACAATTGACCTTCCTGGNTGTGATGGATCAAGTGGTGGTGGTGGATCCCTTGGATGCTGCTATCCACTCTCTGACCATAGCATATGGCATGTTGGTGAAGGCTTCTCAGTGTTTTCTCAGTTCGGATGCAGGGGATTCTCTAGTTGGGCTGTTGTAAGAGGGTCTTATTCAGGAAAACGTGGGGTCAAATTGGAATGGGCTGTTCCTAGGAACAACTCCTCCAAGCAGGTTTGTGCAGGGAATGCAGACATGGTAAATGCTACAGCAGTTGAAGGTGGTGTAAGGTGTGTTTGTCAAGGTGGATTTGTTGGTGATGGGTTTGCTAATGGAACAGGATGCTTACAGTCCTGTTTCAAGGATGGACAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGGAAAATGGTTATCATTGCCGAAAAGCCAGGAATGTTTGATGCCGAGCAGGCTTACTACCACAACATTTCATTCCGCAAAGCTTGTAGAACTCGACTATTCAGCCACCTTGAGCTAGAGGAAGCAACCAATGGTTTTGAAGAGGGTAAGAAACTCATGCATTGCAGTAATGGTACAACAATGTTTGCTGGAGTTCTTGGGGATGGATCGCATGTAGCTGTCCACAAGTTAAAATGTGAGAATGAGAAGGACTTAATGCAAGTCCTGTCACAAATTGAGGTTCTATCTGCTATTGTACATAGGAATGTGGCATGCCTTCTTGGATGCTGCATTGATGCTAGCTACACTCCTCTAGTAGTCTATGAATACCCTGCAAATGGTACCCTGGAGGAGCATTTACGCCAAAGCNAAGTGCGAAAAATCGGTTTAGACTGGTATAGGAGATTGACTATTGCTGCAGAAATAGCTAGTACTGTTGCTTTGTTACATTATGACAAGTCTCCTCCCATATTTCACCATAACCTTAAGTCTAGCTGCATCTTCCTAGATGATGATTTCTCTGTCAAGATTGCAGGGTTTGGCCTACTCAATTCCGATGTTAACTACGATTCGCGCTTGTACAAGAACCGCGAGTGCTTGCGCTTCTGCAAGAATGATGTCTATGACATGGGTGTGGTGCTCCTTGAGATCATCTCAGGCTCATGCCAATTGGACTTTCCTTTAGCCTTGCAGAAAATAAGGGCTGGTAAGATAGAAGAAATTGTTGATCCACTTCTTTACTACCATGAACAACCGCACCACCACCAAGAGCAAATACAGATAATTGCAGACCTTGCAACAAGGTGCATGCTGTTTGGTGCAGATGGGAAGCTAGGAATGATTGATGTTGCTAGGGAATTGGTACACTTAATAAGAGAGAGTCCTGATGGAGGAACTACAAAAGGTTCTGCACTTGATGAAACATTCTCAAATTCAAGCCTTCTTCAAATGATATCAATGTCTCCTGATTCTATGAATGTTCCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	175433	178228	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.Other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008127.1	PF13947.1	GUB_WAK_bind	33	106	4.90E-09
Glyur000072s00008127.1	PF07714.12	Pkinase_Tyr	357	522	4.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.354
SRR1783600	control	0.290
SRR1783602	moderate drought stress	0.079
SRR1811619	moderate drought stress	0.080

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.057
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.058
DRR006524	Root Summer glycyrrhizin low producing strain	0.066
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.049
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.048

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	3.237
SRR2868004	Drought Stress(Tissue:root)	2.746
SRR2967015	Control (Tissue:root)	2.637

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.015
SRR9715739	Root	0.026
SRR9715742	Root	0.623
SRR9715743	Root	0.221

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.633
SRR8749028	MeJA induced 9h	0.115
SRR8749029	MeJA induced 9h	0.064
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.373
SRR8400027	Control-Root	0.864