Gene detail information of Glyur000072s00008129.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G01030.1 | 6.00E-54 | AP2/B3-like transcriptional factor family protein |
| NR | XP_007135337.1 | 1.08E-154 | hypothetical protein PHAVU_010G120900g [Phaseolus vulgaris] |
| Swissprot | tr|O82799|NGA1_ARATH | 2.00E-71 | B3 domain-containing transcription factor NGA1 |
| trEMBL | tr|V7ANU2|V7ANU2_PHAVU | 4.00E-155 | Uncharacterized protein {ECO:0000313|EMBL:ESW07332.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 201178 | 203533 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | B3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008129.2 | PF02362.16 | B3 | 204 | 308 | 1.00E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.519 |
| SRR1783600 | control | 0.494 |
| SRR1783602 | moderate drought stress | 0.692 |
| SRR1811619 | moderate drought stress | 0.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.041 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.885 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.992 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.991 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.104 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.107 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.219 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.750 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.553 |
| SRR2967015 | Control (Tissue:root) | 1.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.417 |
| SRR9715740 | Leave | 5.146 |
| SRR9715741 | Leave | 7.038 |
| SRR9715739 | Root | 0.310 |
| SRR9715742 | Root | 1.358 |
| SRR9715743 | Root | 0.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.707 |
| SRR8749028 | MeJA induced 9h | 17.363 |
| SRR8749029 | MeJA induced 9h | 9.298 |
| SRR8749030 | Uninduced | 7.866 |
| SRR8749031 | Uninduced | 4.426 |
| SRR8749032 | Uninduced | 4.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.955 |
| SRR8400027 | Control-Root | 1.273 |