Gene detail

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Gene detail information of Glyur000072s00008155.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53730.1	0	STRUBBELIG-receptor family 6
NR	XP_004510591.1	0	PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Cicer arietinum]
COG	YP_001958461.1	3.00E-21	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9C8M9\|SRF6_ARATH	0	Protein STRUBBELIG-RECEPTOR FAMILY 6 (Precursor)
trEMBL	tr\|I1KHK4\|I1KHK4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G05230.1}

Sequence

Transcript Sequence

>Glyur000072s00008155.1
TATTATTCCTTAACAAGGTAAGGTAGATATTGGATTCTTCTAGCGATTCGTGCTTGCCAGCTTTACTCGGCTATGGAGTGGAGGCCAACATATATATAAGCCTGAAAAATATTACTAAAAATTAAAAATTGGCGAAAAGGGGTTGATTGCACATTGTTTTTGCTTTCTGGGTAGGAAGAATTTTTGCNAGCAAAGATTGATTGATTCAGAGAAGAAAAAGATGGTGGTGGATCCGAGGGTGATGCTGTTGCTAGTNTTCATCAGCACCTTCACTTTGACCATCAATGGTGACACAGATCCAAATGACGCTGCTTCTTTAAAGGTTTTGTTTCAAAGTATGAACTCACCATCCCAGCTAAACTGGCCTGCAAATGGTGATGATCCCTGTGGACAATCTTGGAAAGGCATCACTTGCTCAGGCAACCGAGTTACCGAGATTAAGTTACCTGGTCTTGGATTAACTGGATCTTTGGGTTACCAACTACAGTCCTTGACATCTGTGACAAACCTAGACGTGAGTAACAACAATCTTGCTGGAACCATACCATACCAACTTCCTCCCAATTTGCAGCACTTAAATCTTGCTAATAATAATTTCAATGGGATAATACCTTATTCTCTTTCTGACATGACTTCTCTTATAGACCTGAATCTTGGTCACAATCAGTTCCAACAAGCACTGAATGTTGACTTTCAAAAGCTTACTTCCCTCTCTACATTGGATCTCTCTTTCAATTCTTTAACAGGTGACCTCCCTCAGACTTTGACCTCACTTTCAAGCATAACCACCTTGTATCTGCAAAACAACCAGTTTACAGGCACCATTAATGTCCTTGCTAATCTGCCTCTTGAGACACTGAATGTTGAAAACAACCATTTTACTGGCTGGATACCAGAACAGTTGAAAAACATAAACTTACAAAAGGATGGTAATACATGGAGCTCGGGACCTGCACCTCCACCTCCTCCTGGGACACCTCCAATAACAAAAGGCAGCCGAAGTCACAAGTCTGATGGACATGGAACCTCGTCAGATACTGGCACAAGTGGTGAAGGCAAAAAATCCGGTATAGGTGCTGGTGGTATTGCTGGAATAGTGATCTCCATCTTAGTTGTTGGGGCNATAGTAGCATTCTTTCTGGTGAAGAGAAGATCCAAGAAGTCTTTTTCAGATGTAGAAAAGACAGACAATCAGCCCTTGGCTCCTTCACATGAAGTGCATGAAATGAATTCAGTGCAAACTTCTTCTGTAATTGACTTGAAGACATTTGATACCTCTGCCGCCCCAATAAGTCTTAAACCCCCTCCTTTTGATCGTCGTAAATCATTTGATGAAGATGAGTTTTCAAAGAAGCCCGCTGTTGTCAAGAAGACCATAACAGCTCCTGCAAATGTGAAATCATATTCTATAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTCTTGGTGAGGGATCTTTTGGACGTGTATACCGTGCTCAATTTGATGATGGGAAGGTTCTTGCGGTGAAGAAGATAGATTCATCTGTCCTTCCCCATGATTTGTCTGACGATTTTGTAGAAATGGTTTCAAACCTCTCCCGTTTGCATCATCCCAATGTGACAGAGCTTGTAGGTTATTGTTCAGAGCANGGACAACACCTCCTAGTCTATGAGTTTCATAAAAATGGATCACTGCATGACTTCCTTCACCTGCCTGATGAGTACAGTAAACCATTGATATGGAATTCACGTGTCAAGATTGCTTTGGGGATCGCACGTGCTTTAGAGTACCTACATGAAGTTTGTTCTCCATCAGTTGTTCATAAAAATATGAAGTCAGCCAACATATTGCTTGATGCTGATCTTAATCCTCATCTTTCAGACAGTGGATTGGCCAGCTATATTCCAAATGCAAACCAGATATTGAACAATAATGCTGGAACTGCTGGATATGATGCTCCGGAAGTTGACTTGTCTGGTCAATATACTCTGAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTTTGAGCAATCTTTGGTTCGATGGGCAACACCTCAACTCCATGATATTGATGCATTGGCTAAAATGGTTGATCCTGCACTGGAAGGACTATACCCTGTTAAGTCTCTTTCTCGATTTGCTGATGTTATTGCTCTCTGTGTTCAGCCGGAACCTGAATTCCGACCACCGATGTCAGAAGTGGTTCAAGCATTGGTTCGATTAGTGCAGCGAACTAACATGAGCAAACGGACACAACGAGGGGGTGATGACCAAGAAACACAAGACTTGTAAAATGGCAACAAAATCCTTCCTGGTATTGATGGATATCAAGAAACACAATACTCGGTTCTTTTTTAACCCTCTCACAGTTTCTCTTCGAGTGAGATTCATTGCACCATTGTTGATCACTGAAGCTAGACACCTATTGATGTATGTTTCTCAGCTATTATTTATTTTATTGGTGGAATAAATCTCAATAATTTAACCCTTTGCAAAATTGAAGCTCGNCTTTCCTTGACGGTTGCCATTGTATTGTTAATAGCTAGGAATCTTGACAAGCTTCTCAGTTTTCATCNTATTTGTAAGGAATTTAAATTTAAATTCTCAGAAGTGTGCTTTCAGTTTGAGAATAATTAAAACGTGTCAATTGTTAGTGAGATATTTTAATATCTAT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00072	371496	378949	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000072s00008155.1	PF08263.7	LRRNT_2	27	66	0.00029
Glyur000072s00008155.1	PF13504.1	LRR_7	92	105	8.3
Glyur000072s00008155.1	PF00560.28	LRR_1	115	135	0.13
Glyur000072s00008155.1	PF12799.2	LRR_4	162	207	1.70E-06
Glyur000072s00008155.1	PF00069.20	Pkinase	408	678	9.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	89.076
SRR1783600	control	89.803
SRR1783602	moderate drought stress	44.369
SRR1811619	moderate drought stress	43.810

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.253
DRR006520	Root Summer glycyrrhizin high producing strain	32.884
DRR006521	Root Winter glycyrrhizin high producing strain	9.846
DRR006522	Root Winter glycyrrhizin high producing strain	9.444
DRR006523	Root Summer glycyrrhizin low producing strain	38.587
DRR006524	Root Summer glycyrrhizin low producing strain	38.910
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.271
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	92.443
SRR2868004	Drought Stress(Tissue:root)	62.798
SRR2967015	Control (Tissue:root)	45.028

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	13.464
SRR9715740	Leave	7.465
SRR9715741	Leave	11.815
SRR9715739	Root	17.836
SRR9715742	Root	33.835
SRR9715743	Root	32.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	127.895
SRR8749028	MeJA induced 9h	320.217
SRR8749029	MeJA induced 9h	162.039
SRR8749030	Uninduced	151.870
SRR8749031	Uninduced	46.646
SRR8749032	Uninduced	52.118

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	60.854
SRR8400027	Control-Root	64.388