Gene detail information of Glyur000072s00008158.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17270.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004510588.1 | 0 | PREDICTED: uncharacterized protein LOC101496484 [Cicer arietinum] |
| trEMBL | tr|G7L9X3|G7L9X3_MEDTR | 0 | GDP-fucose protein O-fucosyltransferase {ECO:0000313|EMBL:AET01950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 389808 | 393266 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03691 | POFUT | EC:2.4.1.221 | Other types of O-glycan biosynthesis | map00514 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008158.1 | PF10250.4 | O-FucT | 230 | 528 | 4.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.286 |
| SRR1783600 | control | 18.326 |
| SRR1783602 | moderate drought stress | 9.024 |
| SRR1811619 | moderate drought stress | 9.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.899 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.837 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.233 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.926 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.877 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.022 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.010 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.137 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.023 |
| SRR2967015 | Control (Tissue:root) | 11.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.395 |
| SRR9715740 | Leave | 5.291 |
| SRR9715741 | Leave | 5.679 |
| SRR9715739 | Root | 9.229 |
| SRR9715742 | Root | 20.971 |
| SRR9715743 | Root | 17.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.405 |
| SRR8749028 | MeJA induced 9h | 39.972 |
| SRR8749029 | MeJA induced 9h | 18.173 |
| SRR8749030 | Uninduced | 25.076 |
| SRR8749031 | Uninduced | 6.809 |
| SRR8749032 | Uninduced | 10.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.305 |
| SRR8400027 | Control-Root | 22.389 |