Gene detail information of Glyur000072s00008160.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53820.1 | 8.00E-13 | RING/U-box superfamily protein |
| NR | NP_001237079.1 | 1.88E-61 | uncharacterized protein LOC100500375 [Glycine max] |
| Swissprot | tr|P0C035|ATL60_ARATH | 1.00E-14 | RING-H2 finger protein ATL60 |
| trEMBL | tr|C6T1J3|C6T1J3_SOYBN | 7.00E-62 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G01715.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00072 | 403477 | 403914 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000072s00008160.1 | PF13639.1 | zf-RING_2 | 49 | 92 | 1.80E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.556 |
| SRR1783600 | control | 2.543 |
| SRR1783602 | moderate drought stress | 1.664 |
| SRR1811619 | moderate drought stress | 1.404 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.646 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.711 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.311 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.285 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.004 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.221 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 51.515 |
| SRR2868004 | Drought Stress(Tissue:root) | 72.075 |
| SRR2967015 | Control (Tissue:root) | 29.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.422 |
| SRR9715740 | Leave | 6.718 |
| SRR9715741 | Leave | 33.141 |
| SRR9715739 | Root | 4.943 |
| SRR9715742 | Root | 4.269 |
| SRR9715743 | Root | 5.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 39.404 |
| SRR8749028 | MeJA induced 9h | 92.495 |
| SRR8749029 | MeJA induced 9h | 76.581 |
| SRR8749030 | Uninduced | 217.346 |
| SRR8749031 | Uninduced | 307.974 |
| SRR8749032 | Uninduced | 475.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 37.205 |
| SRR8400027 | Control-Root | 24.937 |