Gene detail information of Glyur000073s00007762.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36020.18.00E-28cold shock domain protein 1
NRXP_004509364.16.85E-95PREDICTED: cold shock protein 1-like [Cicer arietinum]
COGYP_005472583.12.00E-18putative cold shock protein [Caldisericum exile AZM16c01]
Swissprottr|O65639|CSP1_ARATH4.00E-55Cold shock protein 1
trEMBLtr|K7MH03|K7MH03_SOYBN6.00E-97Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G23695.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000732444425280-


Gene family

Gene familysubfamily
Transcription Factors FamilyCSD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000073s00007762.1PF00313.17CSD7719.70E-25
Glyur000073s00007762.1PF00098.18zf-CCHC1141287.00E-05
Glyur000073s00007762.1PF00098.18zf-CCHC1451597.50E-05
Glyur000073s00007762.1PF00098.18zf-CCHC1912044.00E-06
Glyur000073s00007762.1PF00098.18zf-CCHC2192335.10E-06
Glyur000073s00007762.1PF00098.18zf-CCHC2592734.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control46.957
SRR1783600control40.922
SRR1783602moderate drought stress49.021
SRR1811619moderate drought stress61.518

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain80.925
DRR006520Root Summer glycyrrhizin high producing strain102.943
DRR006521Root Winter glycyrrhizin high producing strain100.189
DRR006522Root Winter glycyrrhizin high producing strain98.333
DRR006523Root Summer glycyrrhizin low producing strain49.558
DRR006524Root Summer glycyrrhizin low producing strain46.255
DRR006525Leaf Summer glycyrrhizin high producing strain18.715
DRR006526Leaf Summer glycyrrhizin high producing strain21.163

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)89.070
SRR2868004Drought Stress(Tissue:root)68.160
SRR2967015Control (Tissue:root)63.783

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.577
SRR9715740Leave22.129
SRR9715741Leave26.300
SRR9715739Root114.111
SRR9715742Root84.534
SRR9715743Root90.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h106.683
SRR8749028MeJA induced 9h68.476
SRR8749029MeJA induced 9h89.761
SRR8749030Uninduced30.027
SRR8749031Uninduced61.434
SRR8749032Uninduced134.890

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root92.399
SRR8400027Control-Root85.536

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved