Gene detail information of Glyur000073s00007769.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36050.2 | 6.00E-180 | endonuclease/exonuclease/phosphatase family protein |
| NR | XP_006574678.1 | 0 | PREDICTED: DNA-(apurinic or apyrimidinic site) lyase 2-like [Glycine max] |
| COG | YP_003958504.1 | 2.00E-25 | exodeoxyribonuclease III [Eubacterium limosum KIST612] |
| trEMBL | tr|I1JCH3|I1JCH3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G05430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00073 | 56846 | 61836 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10772 | APEX2 | EC:4.2.99.18 | Base excision repair | map03410 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000073s00007769.1 | PF03372.18 | Exo_endo_phos | 4 | 325 | 2.10E-22 |
| Glyur000073s00007769.1 | PF06839.7 | zf-GRF | 561 | 610 | 3.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.487 |
| SRR1783600 | control | 4.529 |
| SRR1783602 | moderate drought stress | 6.155 |
| SRR1811619 | moderate drought stress | 6.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.825 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.615 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.612 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.499 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.503 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.865 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.026 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.548 |
| SRR2967015 | Control (Tissue:root) | 8.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.739 |
| SRR9715740 | Leave | 8.352 |
| SRR9715741 | Leave | 5.658 |
| SRR9715739 | Root | 0.648 |
| SRR9715742 | Root | 2.412 |
| SRR9715743 | Root | 1.668 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.151 |
| SRR8749028 | MeJA induced 9h | 4.555 |
| SRR8749029 | MeJA induced 9h | 2.291 |
| SRR8749030 | Uninduced | 3.814 |
| SRR8749031 | Uninduced | 3.136 |
| SRR8749032 | Uninduced | 3.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.866 |
| SRR8400027 | Control-Root | 6.891 |