Gene detail information of Glyur000073s00007775.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G75680.1 | 1.00E-168 | glycosyl hydrolase 9B7 |
| NR | XP_004509346.1 | 0 | PREDICTED: endoglucanase 10-like [Cicer arietinum] |
| COG | YP_290232.1 | 9.00E-86 | endoglucanase [Thermobifida fusca YX] |
| Swissprot | tr|Q69SG5|GUN24_ORYSJ | 0 | Endoglucanase 24 (Precursor) |
| trEMBL | tr|G7LC59|G7LC59_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00073 | 95011 | 98325 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000073s00007775.1 | PF00759.14 | Glyco_hydro_9 | 67 | 526 | 4.70E-139 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.684 |
| SRR1783600 | control | 2.819 |
| SRR1783602 | moderate drought stress | 3.161 |
| SRR1811619 | moderate drought stress | 3.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.214 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.362 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.335 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.614 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.315 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.353 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.861 |
| SRR2967015 | Control (Tissue:root) | 5.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.509 |
| SRR9715740 | Leave | 0.843 |
| SRR9715741 | Leave | 0.947 |
| SRR9715739 | Root | 1.164 |
| SRR9715742 | Root | 1.766 |
| SRR9715743 | Root | 1.671 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.437 |
| SRR8749028 | MeJA induced 9h | 0.771 |
| SRR8749029 | MeJA induced 9h | 0.477 |
| SRR8749030 | Uninduced | 0.340 |
| SRR8749031 | Uninduced | 0.037 |
| SRR8749032 | Uninduced | 0.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.558 |
| SRR8400027 | Control-Root | 7.033 |