Gene detail information of Glyur000073s00007786.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18040.1 | 3.00E-53 | peptidylprolyl cis/trans isomerase, NIMA-interacting 1 |
| NR | XP_004509352.1 | 1.29E-73 | PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1-like [Cicer arietinum] |
| COG | YP_421837.1 | 5.00E-21 | parvulin-like peptidyl-prolyl isomerase [Magnetospirillum magneticum AMB-1] |
| Swissprot | tr|Q94G00|PIN1_MALDO | 2.00E-71 | Peptidyl-prolyl cis-trans isomerase Pin1 |
| trEMBL | tr|V7CFQ6|V7CFQ6_PHAVU | 3.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:ESW28120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00073 | 141225 | 143671 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09578 | PIN1 | EC:5.2.1.8 | RIG-I-like receptor signaling pathway | map04622 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000073s00007786.1 | PF00639.16 | Rotamase | 15 | 122 | 1.60E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.105 |
| SRR1783600 | control | 31.086 |
| SRR1783602 | moderate drought stress | 21.789 |
| SRR1811619 | moderate drought stress | 21.513 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 57.205 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.888 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 51.612 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.811 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 53.785 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 47.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 47.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 162.020 |
| SRR2868004 | Drought Stress(Tissue:root) | 142.082 |
| SRR2967015 | Control (Tissue:root) | 121.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 148.476 |
| SRR9715740 | Leave | 170.952 |
| SRR9715741 | Leave | 162.473 |
| SRR9715739 | Root | 69.208 |
| SRR9715742 | Root | 83.133 |
| SRR9715743 | Root | 77.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 69.535 |
| SRR8749028 | MeJA induced 9h | 39.240 |
| SRR8749029 | MeJA induced 9h | 40.133 |
| SRR8749030 | Uninduced | 14.554 |
| SRR8749031 | Uninduced | 6.072 |
| SRR8749032 | Uninduced | 11.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 139.277 |
| SRR8400027 | Control-Root | 129.078 |