Gene detail information of Glyur000073s00007810.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G66320.27.00E-63GATA transcription factor 5
NRXP_004509331.12.85E-116PREDICTED: GATA transcription factor 5-like [Cicer arietinum]
Swissprottr|Q9FH57|GATA5_ARATH2.00E-78GATA transcription factor 5
trEMBLtr|G7LD10|G7LD10_MEDTR2.00E-115GATA type zinc finger transcription factor family protein {ECO:0000313|EMBL:AET03841.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00073265269266818-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0045893  positive regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000073s00007810.1PF00320.22GATA2452794.30E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.109
SRR1783600control2.240
SRR1783602moderate drought stress2.627
SRR1811619moderate drought stress2.489

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.982
DRR006520Root Summer glycyrrhizin high producing strain2.232
DRR006521Root Winter glycyrrhizin high producing strain2.158
DRR006522Root Winter glycyrrhizin high producing strain1.902
DRR006523Root Summer glycyrrhizin low producing strain1.294
DRR006524Root Summer glycyrrhizin low producing strain1.378
DRR006525Leaf Summer glycyrrhizin high producing strain2.452
DRR006526Leaf Summer glycyrrhizin high producing strain2.556

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.155
SRR2868004Drought Stress(Tissue:root)4.002
SRR2967015Control (Tissue:root)5.258

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.651
SRR9715740Leave4.839
SRR9715741Leave2.059
SRR9715739Root2.422
SRR9715742Root4.037
SRR9715743Root3.265

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.659
SRR8749028MeJA induced 9h0.115
SRR8749029MeJA induced 9h0.182
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.116
SRR8400027Control-Root6.591

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved