Gene detail

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Gene detail information of Glyur000073s00007817.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G75440.1	2.00E-48	ubiquitin-conjugating enzyme 16
NR	XP_009406551.1	3.22E-77	PREDICTED: probable ubiquitin-conjugating enzyme E2 16 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9FWT2\|UBC16_ARATH	2.00E-68	Probable ubiquitin-conjugating enzyme E2 16
trEMBL	tr\|M0TBC6\|M0TBC6_MUSAM	1.00E-77	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P29810_001}

Sequence

Transcript Sequence

>Glyur000073s00007817.1
ATGACTAGCTCCTCAACTTCCTCTCGCAAGAATCTCAGTAAGATTGCCTGCAATAGGCTCCAGAAAGAGCTCGTGGAGTGGCAGGTTTGCTATTTTTTTGGTTCTGAAAGGTGGGTTATTGAAGTGACTGGAGCTCCTGGGACACTTTATGCTAATGAGACCTACCCGCTTCAGGTGGATTTCCCGGAGCATTACCCAATGGAAGCTCCACAGCGAATATTTCTTCATCGTTCATTGCTTCCAGTTTCCCTTCTAAGTCATGATATTCAGATTTACTATATATTGTATGATTCATGGTCCCCAGCCATGACAGTTAGTTCTATCTGCATCAGCATTCTCTCAATGCTTTCAAGCTCAACTGTAAAGCAACGCCCTGAAGATAATGACCGCTATGTAAAGAACTGCAGAAATGGCAGATCTCCCAAGGAGACAAGGTGGTGGTTCCATGATGATAAAGTATAATAACTCTTAACAAGTTCACAAAATTAGAATAGAGGATTATCCTTTCAAAAAGAAAAATGAAGACTTGGGGAAAGGCATTTTGGGAAACTAAACGCTTAATAACTCACGTAAATTGGAATTACCCCATTTGATAACGTGAGGAAACAAACTCAGAATATTGTGTTTAACCCGCATATCTGATAACTGGTCCTTTTATGGGTTTTATTTCTAATGATTTTATGTCGTATATATCTTTGAATTGTCAACATGGTAGTGATATGGTAAAGAACTCCTAATTTCTATATCATTTGAAAAATTGCAAAGTAGTCCCTACATTTATATTGTTTCTTTTAGATGCAATCTTCAATCTTCTCTGAAATCTTTCTACACCACCACTATGGTGGCGATGAAAGTCCTCTCCTTCTCCTTCATCTTCTAGCTGCCACTCGTGATGCTATCAATGTTACCTTCTCTTTTTCGTTCGCCTTCTAGGTTGTCAAACACAGCAACAGAGCTCAAACTTGGTAATATTGGTAGTCCTANAACATTGGTGTAAGGATGTTTTTCTAGCTTGCTAGACCTTAAACTTGGTAGATTGTAGATTGGGGAAACATGGTTGTGGTGGTTTTGATAGAAAAAGGTCATNAGTAAATGCTCTAGTGGTTCTAGCAACGATGAACATGATTTGGAAGGCCCTTTAACAGATGAATTTGTTTTCAAATTTGCATAAAATTTTCTTCATACTTGCACTTTCAAATTCTCAATCATCTGACTGGCTCAGAAGATATTAGGTTCTGTATTGTGTACGCGATTTGTCATCCAAAATCGTCTATTCTAACCGGAGGAAGTTCGGACTAGTTTTNATTTTGCAATTACATCTTCATTGGGTTCTTATTTTGGCAACGTTCAAGTTCTTTGTGCTATAATGCTATTGCAATTAATTCTCTGTGCCATGCTTCAGCCTTGGAGGTGGACAAGTGCATAGGAGGAAAGAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	291644	295070	-

Gene family

Gene family	subfamily
Ubiquitin Family	UBC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10688	UBE2W, UBC16	EC:2.3.2.25	Ubiquitin mediated proteolysis	map04120

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007817.1	PF00179.21	UQ_con	34	146	5.10E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.049
SRR1783600	control	7.168
SRR1783602	moderate drought stress	5.553
SRR1811619	moderate drought stress	5.730

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.027
DRR006520	Root Summer glycyrrhizin high producing strain	8.112
DRR006521	Root Winter glycyrrhizin high producing strain	7.957
DRR006522	Root Winter glycyrrhizin high producing strain	7.854
DRR006523	Root Summer glycyrrhizin low producing strain	13.764
DRR006524	Root Summer glycyrrhizin low producing strain	13.138
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.556
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.316
SRR2868004	Drought Stress(Tissue:root)	13.721
SRR2967015	Control (Tissue:root)	11.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	18.794
SRR9715740	Leave	16.534
SRR9715741	Leave	19.719
SRR9715739	Root	5.857
SRR9715742	Root	8.186
SRR9715743	Root	7.270

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.719
SRR8749028	MeJA induced 9h	11.370
SRR8749029	MeJA induced 9h	20.968
SRR8749030	Uninduced	15.984
SRR8749031	Uninduced	8.150
SRR8749032	Uninduced	9.214

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	10.679
SRR8400027	Control-Root	12.961