Gene detail information of Glyur000073s00007818.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G36380.1 | 2.00E-177 | Cytochrome P450 superfamily protein |
| NR | XP_007156098.1 | 0 | hypothetical protein PHAVU_003G258400g [Phaseolus vulgaris] |
| COG | YP_007055574.1 | 7.00E-58 | cytochrome P450 [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q9M066|C90C1_ARATH | 0 | 3-epi-6-deoxocathasterone 23-monooxygenase |
| trEMBL | tr|V7CD14|V7CD14_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28092.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00073 | 298139 | 305040 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Cytochrome P450 Family | CYP90C1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12637 | CYP90C1, ROT3 | EC:1.14.13.112 | Brassinosteroid biosynthesis | map00905 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000073s00007818.1 | PF00067.17 | p450 | 45 | 468 | 5.20E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.035 |
| SRR1783600 | control | 0.035 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.309 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.119 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.188 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.591 |
| SRR2967015 | Control (Tissue:root) | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.336 |
| SRR9715740 | Leave | 18.273 |
| SRR9715741 | Leave | 24.363 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.951 |
| SRR9715743 | Root | 0.480 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.098 |
| SRR8400027 | Control-Root | 1.699 |