Gene detail

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Gene detail information of Glyur000073s00007819.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36360.1	0	beta-galactosidase 3
NR	XP_004509327.1	0	PREDICTED: beta-galactosidase 3-like [Cicer arietinum]
COG	YP_003380010.1	9.00E-57	beta-galactosidase [Kribbella flavida DSM 17836]
Swissprot	tr\|Q9SCV9\|BGAL3_ARATH	0	Beta-galactosidase 3 (Precursor)
trEMBL	tr\|I1JCK7\|I1JCK7_SOYBN	0	Beta-galactosidase {ECO:0000256\|RuleBase:RU000675}

Sequence

Transcript Sequence

>Glyur000073s00007819.1
ACACACACAAACACAGAGTGTGGCAGATAGCAGTATACTTTGTAGTAACTCGCAGCCACGCATTATCACAGTACTTATAAATTGGTTAGCTCTCAGAGGCAGAACTGGTACAAAACAAGATCCGTGCTCACATCAAGGAATGGACCCTCTTGCTGTCATCATTCTACCATCTACCCATTCTAACTAGAATTTGAAGACCAAAAATCACAATTCACAAGACTCAAGACTGAAGACCACCCCCGACCTATTTTTTCCCCATTGTTCCCGTTCATCTAGAGGAAAATTAAACATGGAAACTAGCTCGTTTTCCAAATGGGTGTTTGCATTTTGCTTGTTTTTGTGCCTGTGCTCTCACCTGATTCACTCCACTGTCACCTACGATAGGAAGGCCATTATCATCAATGGCCAAAGGAGAATCCTTTTCTCTGGCTCCATACATTATCCCAGAAGCACCCCCGATATGTGGGAAGATCTGATTCAGAAGGCCAAAGAGGGAGGTCTAGATGTAATTGAGACCTATGTCTTCTGGAATGTTCACGAGCCTTCTCCTGGCAATTACAATTTTGAAGGAAGGNATGATCTGGTGAGATTCGTAAAGACAATACAGAAAGCAGGGCTCTATGCTCATCTCCGCATTGGACCTTACGTCTGTGCTGAATGGAATTTCGGAGGATTTCCAGTTTGGCTGAAGTATGTTCCGGGCATAAGCTTTAGAACAGACAATGAACCTTTTAAGAGGGCAATGCAAGGGTTCACTGAGAAGATTGTGGGGATGATGAAGAGTGAACAACTCTTTGAATCCCAGGGTGGCCCTATTATACTCTCTCAGATTGAGAATGAGTATGGGGCACAAAGTAAGTTACTTGGAGCTGCTGGCCAAAATTATGTGAACTGGGCAGCAAAAATGGCCGTGGAGATGGGAACTGGAGTCCCTTGGGTGATGTGTAAGGAAGATGATGCNCCAGATCCGGTGATAAACACGTGTAATGGTTTCTATTGTGACAAGTTTTCTCCAAATAGACCCTATAAACCCACAATGTGGACTGAAGCTTGGAGTGGCTGGTTTACAGAATTTGGAGGTCCAATTCACAAAAGACCTGTCCAGGATTTGGCATTTGCAGTTGCTCGATTTGTAACAAGAGGAGGGTCATTTGTAAACTACTACATGTATCATGGAGGAACCAATTTTGGACGAACAGCTGGAGGCCCTTTCATAGCTACCAGTTATGACTATGATGCTCCACTAGATGAATATGGTTTGATTAGGCAACCAAAATATGGTCATCTAAAGGAGCTTCATAGAGCTATCAAGATGTGTGAGCGAGCTTTGGTTTCAACTGACCCAATTGTTACTTCATTAGGGAGCTCCCAACAGGCTCATGTATACTCTACAGAATCTGGAGAGTGTGCTGCTTTTCTCTCAAACTATGATTCAAAATCCTCTGTTAGAGTGCTGTTCAATAATATGCACTATAGCTTACCTCCTTGGTCCGTTAGCATCCTCCCTGATTGTAGAAATGTTGTCTTCAATACGGCAAAAGTTGGAGTGCAAACATCTCAAATGCAAATGTTGCCAACAAATACTCAGATGTTCTCATGGGAGAGTTTTGATGAAGATGTTTCTTCTCTGGATGACGGCTCCACAATCACTGCTCCTGGTCTCCTCGAACAGATAAATGTAACACGAGATACAAGTGATTATCTTTGGTATACAACTAGTGTTGACATAGGTTCATCTGAATCCTTTCTACATGGAGGTGAACTCCCCACTCTCATTGTTCAGTCCACGGGCCATGCTGTACATGTTTTCATCAATGGTCAACTTTCTGGTTCTATCTATGGAACAAGGGAGTATAGAAGATTCACATATACTGGCAAGGTAAACCTTCGTGCCGGGACAAACAGAATAGCTCTGCTCAGTGTTGCCATTGGACTTCCTAATGTGGGAGAACATTATGAGACATGGAGCACTGGAATCCTAGGTCCAGTTGCACTCCTTGGACTTGACCAAGGAAAATGGGACCTATCCCAGCTGAAATGGACTTATCAGGTTGGGCTGAAAGGAGAGGCCATGAATCTTGCATCTCCNAATAGTATCTCTTCTGTTGAGTGGATGCAGTCAGCAATAGTTGTACAAAGAAACCAACCATTGACATGGCACAAGACTTATTTCAATGCACCTGAAGGAGACGAACCATTGGCATTGGATATGGAGGGTATGGGTAAAGGTCAAATATGGATTAATGGACAGAGTATTGGAAGATACTGGACTGCATTTGCTAATGGTAATTGCAATGAATGTAACTATGCTGGGTCATTTAGGCCTTCAAAGTGCCAGCTTGGTTGTGGCCAACCAACCCAGCGATGGTACCATGTCCCTCGATCATGGTTGAAGCCAACTCAAAACCTATTGGTTATTTTCGAGGAACTTGGGGGAGATCCTTCAAAAATTTCACTTGTAAAGAGATCAGTGAGCAGTGTATGTGCTGATGTGTCAGAGTACCACCCAAATATCAAGAATTGGCACATTGAGAGCTATGGGAAGTCAGAAGTGTTCCGCTCACCNAAGGTTCACTTGCATTGTAGCCCTGGCCAGACCATCTCTTCCATTAAATTTGCAAGCTTTGGAACACCTTTGGGGACTTGTGGGAATTATGAGCAAGGAGCTTGCCATTCCCCTGCATCCTATGCCATTTTAGAGAAGAGATGTGTAGGGAAGCCAAGATGCATAGTTACTGTATCAAACAGCAATTTTGGGCAAGACCCATGTCCCAGGGTGTTGAAGCGGTTGTCAGTTGAAGCTGTTTGCGCTCCAGCTTCTACAAATTGGAGGGGTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00073	315776	321095	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH35

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000073s00007819.1	PF01301.14	Glyco_hydro_35	35	339	1.00E-121
Glyur000073s00007819.1	PF02140.13	Gal_Lectin	763	840	6.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.145
SRR1783600	control	10.215
SRR1783602	moderate drought stress	7.271
SRR1811619	moderate drought stress	7.297

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.687
DRR006520	Root Summer glycyrrhizin high producing strain	35.618
DRR006521	Root Winter glycyrrhizin high producing strain	0.039
DRR006522	Root Winter glycyrrhizin high producing strain	0.038
DRR006523	Root Summer glycyrrhizin low producing strain	8.373
DRR006524	Root Summer glycyrrhizin low producing strain	8.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.012
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.040

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	42.731
SRR2868004	Drought Stress(Tissue:root)	25.235
SRR2967015	Control (Tissue:root)	26.948

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.780
SRR9715740	Leave	3.439
SRR9715741	Leave	3.016
SRR9715739	Root	5.320
SRR9715742	Root	8.736
SRR9715743	Root	7.016

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.339
SRR8749028	MeJA induced 9h	0.094
SRR8749029	MeJA induced 9h	0.011
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	26.707
SRR8400027	Control-Root	56.844