Gene detail

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Gene detail information of Glyur000074s00005557.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G18060.1	0	transducin family protein / WD-40 repeat family protein
NR	XP_003532536.1	0	PREDICTED: 66 kDa stress protein-like [Glycine max]
COG	YP_001865069.1	2.00E-33	hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q9FLX9\|NLE1_ARATH	3.00E-11	Notchless protein homolog
trEMBL	tr\|I1KQI6\|I1KQI6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G05640.1}

Sequence

Transcript Sequence

>Glyur000074s00005557.1
ATTGAATATGGATATTCATCGGTTCGTTCTGGCATCGTGCACCGCACACATACTCATTCCTCACTTTCGGCACTCTGCACACTACAGCACAACACTTGAAAAATTGAAAGTAAAGAAGGGTCAAGTGAAGGAGAGCAAGCAAAGAGTGTTTGGAAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGATGGGGCATGAGCTGGTGGAGACTTACTCGTGCATGCCCTCGACGGAGCGTGGGCGTGGGATTCTGATCTCCGGCGACCCCAAGTCCAACTCCATGCTCTACACCAATGGCAGATCGGTGGTCATCATGAACCTCCATAACCCCCTCCACGTCTCCGTCTACGCCGACCACGCCTACCCCGCCACCGTCGCCCGTTTCTCCCCCAACGGCGAATGGGTTGCCTCCGCCGATTCCTCCGGCACCGTCAGGATCTGGGGCACCCGCAACGACTTCGTCCTCAAGAAGGAGTTTCGTNTCCTCTCCGGTCGGATCGATGACCTTCAATGGTCCCCTGACGGCCTCAGGATCGTCGCCGCAGGCGAAGCCAAAGGAAACTCCTTCGTTCGCGCTTTCATGTGGGATTCGGGGACTAATGTTGGTGAATTCGATGGTCACTCGAGGCGGGTTTTGAGTTGTGCATATAAACCCACGAGACCCTTTCGCATTGTCACCTGCGGAGAGGATTTTCTGGTGAATTTTTATGAAGGACCACCGTTTAGATTTAAGCTGTCTCACAGGGATCATTCCAATTTTGTCAATTGTGTAAGATATTCTCCAGATGGCAGTAAATTTGTAAGTGTAAGTTCTGACAAAAGGGGTATCATATTCGATGGAAAGAGTGGAGAGAAGATCGGTGAGTTGTCATCTGAAGGTGGCCACACTGGCAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAACAAGTGCTGACTGTATCTGCTGACAAGTCTGCAAAAGTATGGGACATATCTGAGGACAACAATGGAAAGGTGAAGAAAACATTGACGTGTCCTGGCTCTGGTGGAGTTGAAGACATGCTAGTAGGGTGCCTATGGTTGAACGATTATCTTGTCACTGTTTCACTTGGTGGGAGAATATCTATATTTTTAGCAAGTGATCTTGATAAAGCTCCGACATCCCCGACATCATTTTCTGGACATATGAAAAATGTTTCCTCCTTAACTATTCTTAGAAGCAACCCTAAAGTGCTCTTGTCTAGTAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGTAAATTACAAAGGAAGGAGAATTCTCAAATCAAATCCTTAGCAGCTGGAGAAGAAGAGATTGTTACATCTGGGTTCGATAATAAGATACNGCGAGTTTCTCTACTTGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATNGGAAGTCAACCAAAGGATTTTAGTGTTGCACTTTCATCTCCNGAACTTGTTCTGGTTTCAATTGATTCAGGAGTTGTGCTGCTGCGTGGCACAAAAATTGTGTCAACCNTGAATCTCGGGTTTACTGTTTCAGCGTCCATTGTCTCTCCTGATGGAAGTGAAGCAATTATTGGTGGGCAGGATGGAAAATTGCACATATATTCCATTTCTGGTGATACACTCGTAGAAGAGGCTGTCCTTGAGAAACATCGGGGTGCCATTAGTGTCATACGGTATTCTCCAGACTTTTCAATGTTTGCATCAGGGGATGTCAATCGAGAAGCTGTAGTGTGGGACCGTGCCTCCCAAGATGTCAAGCTTAAGAACATGTTGTACCATACTGCACGGATAAACTGTCTTGCTTGGTCCCCTGATAGCCATAGGATTGCTACAGGATCACTTGACACATGCGTTATTATATATGAAATTGACCAGCCTGCGTCTAACAGAATTACCATAAAGGGTGCTCACTTGGGCGGGGTTTATGGGTTAGTATTCACTGATGAATATAATTTGGCTAGCTCAGGTGAGGATGCTTTTATNCGTGTCTGGAGGATAACCCCTCCATGACAGATCAAGCTCAATTTGGAACAAGTGAAAGGTTTTGGATTTCAAATTTCTTCCTTTACAAGGCTTCCAAAAATCAAAACGGACGAGGGATGTGCTTATCCCCAGTCCCCACACTTAAAGGACAAATGAGNTTTTTTCTCATTGTTTGTTCATATCACAAAAGGACTTGTTGCAACTTGCAAGCATCGGTTTGGTAGTCACTCTTGATTTTGTAGTATGAAGTTGGGGCCATTTTCTTGCTGCCACTTTTAGAANTGGGGTACTTTTTGTGAGTTTCAATACCTAGACTATTACGGTGCCACTGTATATCCCTCTATTGTATGTGCCAGAGTTTTGTCCATAGGATCTTGCTGAGTGCATTACAGGGGGATCAATATGGTCACCGCAGGTTTTTGCATTAAAAGTGCTGATACACTAGAGAACACAAGCAACAATTTATCCTCACCCAAATCCCTTAAGGCCCAGTTTGATTTTCTCTTGAGGGGATACTCAATCGGTTCCTACTGTTCGAGGCCAGATTGATTGTACTGTTTGTTTGTAGTCTGTCTGCAATTGTGTATGTTTGTTGTTTGTTAATTTATTGAGTGTTATTTATTGAAAAAATTAAGGACAATTTTGTGTGGGATCTGCTTACGTTTTCAGAATTAAACTATATTTCGCGTTTTTCACATAACAGGAGGAACGGGGCCAAATTGTAACAAAAATTATTTATTTATTACACAGTAAAATGGGAATACCACTATACCAGTGCAGTAACTATGCCTAAAAAAAACATTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00074	247307	251524	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000074s00005557.1	PF00400.27	WD40	112	146	0.00015
Glyur000074s00005557.1	PF00400.27	WD40	198	234	0.027
Glyur000074s00005557.1	PF00400.27	WD40	244	273	8.70E-06
Glyur000074s00005557.1	PF00400.27	WD40	292	323	4.60E-10
Glyur000074s00005557.1	PF00400.27	WD40	382	417	0.022
Glyur000074s00005557.1	PF00400.27	WD40	550	584	0.086
Glyur000074s00005557.1	PF00400.27	WD40	598	626	1.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.597
SRR1783600	control	41.652
SRR1783602	moderate drought stress	28.762
SRR1811619	moderate drought stress	28.607

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.781
DRR006520	Root Summer glycyrrhizin high producing strain	46.568
DRR006521	Root Winter glycyrrhizin high producing strain	29.987
DRR006522	Root Winter glycyrrhizin high producing strain	29.323
DRR006523	Root Summer glycyrrhizin low producing strain	48.550
DRR006524	Root Summer glycyrrhizin low producing strain	48.335
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.036
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.311

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	52.693
SRR2868004	Drought Stress(Tissue:root)	42.298
SRR2967015	Control (Tissue:root)	44.163

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	23.193
SRR9715740	Leave	23.843
SRR9715741	Leave	23.311
SRR9715739	Root	38.009
SRR9715742	Root	54.284
SRR9715743	Root	51.317

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.700
SRR8749028	MeJA induced 9h	21.635
SRR8749029	MeJA induced 9h	16.055
SRR8749030	Uninduced	7.464
SRR8749031	Uninduced	2.944
SRR8749032	Uninduced	3.682

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	36.899
SRR8400027	Control-Root	39.905