Gene detail information of Glyur000074s00005560.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48630.14.00E-166receptor for activated C kinase 1B
NRXP_007160506.10hypothetical protein PHAVU_002G327500g [Phaseolus vulgaris]
COGYP_007144079.12.00E-46WD-40 repeat-containing protein [Crinalium epipsammum PCC 9333]
Swissprottr|O24076|GBLP_MEDSA0Guanine nucleotide-binding protein subunit beta-like protein
trEMBLtr|C8YZ71|C8YZ71_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW32500.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00074256957259042-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000074s00005560.1PF00400.27WD409446.10E-05
Glyur000074s00005560.1PF00400.27WD4055912.90E-08
Glyur000074s00005560.1PF00400.27WD40991334.30E-10
Glyur000074s00005560.1PF00400.27WD401461799.50E-11
Glyur000074s00005560.1PF00400.27WD401862211.80E-09
Glyur000074s00005560.1PF00400.27WD402262610.022
Glyur000074s00005560.1PF00400.27WD402953190.00048


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control243.098
SRR1783600control243.386
SRR1783602moderate drought stress189.163
SRR1811619moderate drought stress188.926

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain311.405
DRR006520Root Summer glycyrrhizin high producing strain308.408
DRR006521Root Winter glycyrrhizin high producing strain127.969
DRR006522Root Winter glycyrrhizin high producing strain125.295
DRR006523Root Summer glycyrrhizin low producing strain234.081
DRR006524Root Summer glycyrrhizin low producing strain234.790
DRR006525Leaf Summer glycyrrhizin high producing strain110.677
DRR006526Leaf Summer glycyrrhizin high producing strain109.938

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)445.717
SRR2868004Drought Stress(Tissue:root)255.963
SRR2967015Control (Tissue:root)235.788

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave160.952
SRR9715740Leave141.699
SRR9715741Leave131.390
SRR9715739Root363.326
SRR9715742Root284.041
SRR9715743Root295.741

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h508.593
SRR8749028MeJA induced 9h167.414
SRR8749029MeJA induced 9h257.589
SRR8749030Uninduced20.670
SRR8749031Uninduced10.813
SRR8749032Uninduced35.930

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root261.396
SRR8400027Control-Root225.791

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved