Gene detail information of Glyur000074s00005568.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G73690.19.00E-156cyclin-dependent kinase D1;1
NRXP_007160498.10hypothetical protein PHAVU_002G326800g [Phaseolus vulgaris]
COGYP_003134347.15.00E-25protein kinase family protein [Saccharomonospora viridis DSM 43017]
Swissprottr|P29620|CDKD1_ORYSJ0Cyclin-dependent kinase D-1
trEMBLtr|I1KQG7|I1KQG7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G05540.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00074293221297572+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.5.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02202CDK7 EC:2.7.11.22 2.7.11.23 Basal transcription factors map03022
Nucleotide excision repairmap03420
Cell cyclemap04110


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000074s00005568.1PF00069.20Pkinase162962.20E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.407
SRR1783600control8.392
SRR1783602moderate drought stress8.257
SRR1811619moderate drought stress8.151

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.204
DRR006520Root Summer glycyrrhizin high producing strain7.106
DRR006521Root Winter glycyrrhizin high producing strain6.082
DRR006522Root Winter glycyrrhizin high producing strain5.727
DRR006523Root Summer glycyrrhizin low producing strain10.225
DRR006524Root Summer glycyrrhizin low producing strain9.987
DRR006525Leaf Summer glycyrrhizin high producing strain10.389
DRR006526Leaf Summer glycyrrhizin high producing strain10.348

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.988
SRR2868004Drought Stress(Tissue:root)15.668
SRR2967015Control (Tissue:root)15.480

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.450
SRR9715740Leave14.835
SRR9715741Leave8.586
SRR9715739Root2.213
SRR9715742Root4.943
SRR9715743Root4.391

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.610
SRR8749028MeJA induced 9h9.956
SRR8749029MeJA induced 9h9.232
SRR8749030Uninduced13.892
SRR8749031Uninduced10.243
SRR8749032Uninduced8.235

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.984
SRR8400027Control-Root9.005

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved