Gene detail information of Glyur000074s00005575.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48650.20DEA(D/H)-box RNA helicase family protein
NRAET05528.20ATP-dependent RNA helicase DHX36-like protein [Medicago truncatula]
COGYP_005535096.13.00E-72ATP-dependent helicase HrpA [Amycolatopsis mediterranei S699]
Swissprottr|O22899|DHX15_ARATH1.00E-45Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|G7LCG1|G7LCG1_MEDTR0ATP-dependent RNA helicase DHX36-like protein {ECO:0000313|EMBL:AET05528.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00074328679343406-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14442DHX36, RHAU EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000074s00005575.1PF00270.24DEAD3404898.90E-06
Glyur000074s00005575.1PF04408.18HA27528331.30E-22
Glyur000074s00005575.1PF07717.11OB_NTP_bind8729836.20E-13
Glyur000074s00005575.1PF00035.20dsrm108411458.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.346
SRR1783600control11.462
SRR1783602moderate drought stress13.844
SRR1811619moderate drought stress13.738

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.927
DRR006520Root Summer glycyrrhizin high producing strain9.738
DRR006521Root Winter glycyrrhizin high producing strain10.531
DRR006522Root Winter glycyrrhizin high producing strain10.421
DRR006523Root Summer glycyrrhizin low producing strain9.692
DRR006524Root Summer glycyrrhizin low producing strain9.620
DRR006525Leaf Summer glycyrrhizin high producing strain8.686
DRR006526Leaf Summer glycyrrhizin high producing strain8.645

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.157
SRR2868004Drought Stress(Tissue:root)12.258
SRR2967015Control (Tissue:root)11.682

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.521
SRR9715740Leave14.390
SRR9715741Leave13.007
SRR9715739Root2.647
SRR9715742Root13.602
SRR9715743Root11.759

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.899
SRR8749028MeJA induced 9h7.828
SRR8749029MeJA induced 9h4.164
SRR8749030Uninduced5.089
SRR8749031Uninduced4.398
SRR8749032Uninduced3.945

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.779
SRR8400027Control-Root15.630

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved