Gene detail information of Glyur000074s00005585.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17980.10poly(A) polymerase 1
NRAET05522.20poly(A) polymerase-like protein [Medicago truncatula]
COGYP_003950086.18.00E-42endonuclease/exonuclease/phosphatase domain-containing protein [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q9LMT2|PAPS1_ARATH0Nuclear poly(A) polymerase 1 {ECO:0000303|PubMed:18479511}
trEMBLtr|G7LCF5|G7LCF5_MEDTR0Poly(A) polymerase-like protein {ECO:0000313|EMBL:AET05522.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00074372211378260+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14376PAP EC:2.7.7.19 mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0031123  RNA 3'-end processing

GO:0043631  RNA polyadenylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003723  RNA binding

GO:0004652  polynucleotide adenylyltransferase activity

GO:0016779  nucleotidyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000074s00005585.2PF04928.12PAP_central153515.60E-99
Glyur000074s00005585.2PF01909.18NTP_transf_2701441.60E-08
Glyur000074s00005585.2PF04926.10PAP_RNA-bind3524841.50E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.633
SRR1783600control16.703
SRR1783602moderate drought stress33.039
SRR1811619moderate drought stress32.964

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.646
DRR006520Root Summer glycyrrhizin high producing strain19.196
DRR006521Root Winter glycyrrhizin high producing strain33.457
DRR006522Root Winter glycyrrhizin high producing strain32.271
DRR006523Root Summer glycyrrhizin low producing strain13.689
DRR006524Root Summer glycyrrhizin low producing strain13.620
DRR006525Leaf Summer glycyrrhizin high producing strain24.196
DRR006526Leaf Summer glycyrrhizin high producing strain24.187

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.303
SRR2868004Drought Stress(Tissue:root)36.167
SRR2967015Control (Tissue:root)36.772

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.321
SRR9715740Leave34.839
SRR9715741Leave33.448
SRR9715739Root3.673
SRR9715742Root11.826
SRR9715743Root10.683

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.637
SRR8749028MeJA induced 9h23.755
SRR8749029MeJA induced 9h15.369
SRR8749030Uninduced16.279
SRR8749031Uninduced8.578
SRR8749032Uninduced11.602

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.049
SRR8400027Control-Root35.225

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved