Gene detail information of Glyur000075s00007156.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G03650.10starch branching enzyme 2.2
NRXP_004494151.10PREDICTED: 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic-like isoform X1 [Cicer arietinum]
COGYP_677957.10glycogen branching protein [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|Q41058|GLGB1_PEA01,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Precursor)
trEMBLtr|G7L5Z2|G7L5Z2_MEDTR0Starch branching enzyme I {ECO:0000313|EMBL:AES81989.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000757564194640+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00700GBE1, glgB EC:2.4.1.18 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0005978  glycogen biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0003844  1,4-alpha-glucan branching enzyme activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000075s00007156.2PF02922.13CBM_482152975.30E-16
Glyur000075s00007156.2PF00128.19Alpha-amylase3444159.30E-14
Glyur000075s00007156.2PF02806.13Alpha-amylase_C7338272.20E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control142.524
SRR1783600control142.562
SRR1783602moderate drought stress158.343
SRR1811619moderate drought stress155.527

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain112.775
DRR006520Root Summer glycyrrhizin high producing strain112.582
DRR006521Root Winter glycyrrhizin high producing strain301.839
DRR006522Root Winter glycyrrhizin high producing strain294.047
DRR006523Root Summer glycyrrhizin low producing strain78.947
DRR006524Root Summer glycyrrhizin low producing strain82.599
DRR006525Leaf Summer glycyrrhizin high producing strain141.723
DRR006526Leaf Summer glycyrrhizin high producing strain140.427

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.258
SRR2868004Drought Stress(Tissue:root)26.594
SRR2967015Control (Tissue:root)33.838

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.095
SRR9715740Leave56.944
SRR9715741Leave36.841
SRR9715739Root29.894
SRR9715742Root92.073
SRR9715743Root82.312

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.240
SRR8749028MeJA induced 9h26.151
SRR8749029MeJA induced 9h20.212
SRR8749030Uninduced7.272
SRR8749031Uninduced5.016
SRR8749032Uninduced6.491

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root180.603
SRR8400027Control-Root247.530

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved