Gene detail information of Glyur000075s00007178.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03740.1 | 3.00E-30 | histone deacetylase 2C |
| NR | XP_004494142.1 | 1.57E-53 | PREDICTED: histone deacetylase HDT1-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9LZR5|HDT3_ARATH | 1.00E-35 | Histone deacetylase HDT3 |
| trEMBL | tr|K7KFY2|K7KFY2_SOYBN | 8.00E-54 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G34850.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00075 | 236287 | 240678 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.434 |
| SRR1783600 | control | 59.872 |
| SRR1783602 | moderate drought stress | 61.410 |
| SRR1811619 | moderate drought stress | 60.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 115.610 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.011 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 113.578 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 108.435 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 97.410 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 97.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.037 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 108.451 |
| SRR2868004 | Drought Stress(Tissue:root) | 100.657 |
| SRR2967015 | Control (Tissue:root) | 88.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 52.185 |
| SRR9715740 | Leave | 66.957 |
| SRR9715741 | Leave | 64.396 |
| SRR9715739 | Root | 12.710 |
| SRR9715742 | Root | 51.492 |
| SRR9715743 | Root | 44.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 86.518 |
| SRR8749028 | MeJA induced 9h | 37.282 |
| SRR8749029 | MeJA induced 9h | 57.490 |
| SRR8749030 | Uninduced | 33.433 |
| SRR8749031 | Uninduced | 11.852 |
| SRR8749032 | Uninduced | 26.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 122.392 |
| SRR8400027 | Control-Root | 127.810 |