Gene detail

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Gene detail information of Glyur000075s00007192.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G36570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004494131.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400-like [Cicer arietinum]
COG	YP_002524068.1	2.00E-18	serine/threonine-protein kinase PksC [Thermomicrobium roseum DSM 5159]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	3.00E-158	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|A0A072U4N7\|A0A072U4N7_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH24103.1}

Sequence

Transcript Sequence

>Glyur000075s00007192.1
ATGAACAAGCTGGCATTGGCATTGGCCTTGGCCTTGGGGTTCCTCTGTGTGGCACAGGGTGCACCCCAGAATGATACACACGCCCTCACCGAATTCCGCCTCCAGGCCGACGCCCACGGCTACCTAGTCGGAAACTGGACCGGCGGAGACGCCTGCACCGCCGCATGGCGCGGCGTGGAGTGCTCCCCAAACGGCAGAGTAGTGGGCCTCTCCGTCCCTTCCCTGAATCTCCGAGGCCCAATCGAACCTCTATCATCCCTCACCTACCTGCGACTCCTCGACCTCCACGACAACCGCTTGAACGGAACCATTTCCCCTCTCTCCAACTGCACCGCCCTCGAGCTCCTCTACCTCTCCGGCAACGACTTCTCCGGCGATATTCCGCCGGAGATAGGCTCCCTCAGGCTCCTCATCAGGCTCGACCTCTCCGACAACAACGTCCACGGCACAATCCCAAAAGAACTCTCCCATCTGACCCATCTTCTCACGCTCCGGCTACAGAACAACGAGCTCTCCGGCCATGTCCCCGATCTCTCTTCTTCCCTCGTCAACCTCAGCGAGCTCAACATGACCAACAACGAACTCCACGGACGCATACCCGACGCCATGCTCACGAAATTCGGCAATGCAAGCTTCTCCGGCAACGACGGTCTTTGCGCTGGATCGTCGAATTGTTCTGTTACCGAAACTACTCCTTCTTCTTCTGATGCTTCTCCTGGTTCGACTGAAACTGTTCCTTCAAACCCAACCTCGATCCCACAAACAAGTGGCATCACTGCAGCTCCTGCTGAAAAACGGAAGGGGTTGAGTGCCGGAGGCATTGTAGCGGTTGTGGTGGCGGTTTGTGTGGTGTCGGTGGTGGCGATTTCTTTTGTGGTGGCTCATTGTTGCGCCAGGGGAGGAAGGTCTAAGTCTAACTCGACGGTGGGGAGTGAGATCGGTGGGAAGAGGAAGAGTGAGAGTAGCTACGGAAGCGAGAAGAAAGTGATTGGGACGACGGAGACAGAGAGAAGCAGCAAGTTGGTGTTTTTTGATAGGAGGAGTGAGTTTGAGTTGGAGGATCTGCTTCGGGCGTCGGCGGAGATGCTTGGGAAGGGTAGTTTGGGAACGGTTTACAGGGCGGTGCTGGATGATGGGTGCACCGTTGCCGTGAAGAGGCTCAAGGACGCTAACCCCTGCGATAGGCAGCAATTTGAACAGTATATGGATGTTGTGGGGAAGCTCAAGCACCCCAACATTGCCAGACTCAGAGCCTATTACTATGCCAAGGAAGAAAAGCTTCTTGTCTATGATTATCTCTCCAACGGAAGCTTGCATACTCTTCTTCATGGGAACCGTGGTCCAGGGAGGATTCCATTGGATTGGACCACAAGAATAAGCTTGGTGTTGGGGGCAGCAAGAGGCCTTGCTCGGATTCATGCAGAGTATAGTGCTGCCAAGATACCCCATGGGAATGTCAAGTCTTCCAATGTGCTTCTCGACAAGAACGGGGTTGCTTGCATCTCTGATTTCGGGTTGTCACTGCTGTTGAACCCTGCTCACGCAGTTGCAAGGTTGGGTGGGTACAGAGCTCCTGAACAAGCAGAAGCAAAGAGGCTGTCACAGGAAGCTGACGTGTACAGTTTCGGGGTATTGCTGTTGGAGGTTCTCACTGGTAGAGCTCCGTCTCATCAGTACCCTTCTCCAGCTGCTCGTCCTAGAGTGGAGTTAGAGGAACAACAACAAGAGGTGGATCTTCCCAAATGGGTTCGCTCCATTGTGAAGGAAGAGTGGACTTCTGAGGTGTTTGATCAGGAGCTGTTGAGGTACAAGAACATTGAGGAAGAGCTNGTGTCGATGCTGAATGTGGGTCTGGCTTGTGTGGTGTCACAACCTGAGAGGAGGCCAACCATGTTGGAAGTTGCTAAGATGATTGAGGATATCAGGGTGGAACAATCTCCTCTGCGAGAGGATTATGATGAGTCACGCAATTCACTCTCACCTTCACTTGCTACTACCGAAGATGGCCTAGCTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	308346	311060	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007192.1	PF12799.2	LRR_4	88	128	4.20E-07
Glyur000075s00007192.1	PF00560.28	LRR_1	137	158	0.2
Glyur000075s00007192.1	PF00069.20	Pkinase	361	635	1.60E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.483
SRR1783600	control	12.207
SRR1783602	moderate drought stress	11.360
SRR1811619	moderate drought stress	11.351

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.460
DRR006520	Root Summer glycyrrhizin high producing strain	72.770
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	33.957
DRR006524	Root Summer glycyrrhizin low producing strain	33.460
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.093
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	47.071
SRR2868004	Drought Stress(Tissue:root)	27.824
SRR2967015	Control (Tissue:root)	40.225

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.296
SRR9715740	Leave	0.000
SRR9715741	Leave	0.497
SRR9715739	Root	18.159
SRR9715742	Root	9.302
SRR9715743	Root	11.630

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.040
SRR8749028	MeJA induced 9h	0.504
SRR8749029	MeJA induced 9h	1.100
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.038
SRR8749032	Uninduced	0.317

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	45.636
SRR8400027	Control-Root	78.844