Gene detail information of Glyur000075s00007195.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53000.1 | 1.00E-131 | phloem protein 2-A15 |
| NR | XP_003521431.1 | 0 | PREDICTED: F-box protein PP2-A15-like [Glycine max] |
| Swissprot | tr|Q9LF92|P2A15_ARATH | 2.00E-165 | F-box protein PP2-A15 |
| trEMBL | tr|I1JPV3|I1JPV3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G34720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00075 | 325709 | 328764 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000075s00007195.1 | PF14299.1 | PP2 | 111 | 282 | 7.00E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.193 |
| SRR1783600 | control | 19.185 |
| SRR1783602 | moderate drought stress | 20.184 |
| SRR1811619 | moderate drought stress | 19.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.315 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.564 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.650 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.015 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.958 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.765 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.046 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.464 |
| SRR2967015 | Control (Tissue:root) | 19.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.184 |
| SRR9715740 | Leave | 24.208 |
| SRR9715741 | Leave | 19.386 |
| SRR9715739 | Root | 17.710 |
| SRR9715742 | Root | 18.410 |
| SRR9715743 | Root | 18.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.851 |
| SRR8749028 | MeJA induced 9h | 7.555 |
| SRR8749029 | MeJA induced 9h | 9.572 |
| SRR8749030 | Uninduced | 4.715 |
| SRR8749031 | Uninduced | 3.136 |
| SRR8749032 | Uninduced | 5.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.863 |
| SRR8400027 | Control-Root | 31.294 |