Gene detail information of Glyur000075s00007200.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03795.1 | 9.00E-148 | Exostosin family protein |
| NR | XP_003553575.1 | 0 | PREDICTED: probable glycosyltransferase At5g03795-like [Glycine max] |
| COG | YP_677520.1 | 4.00E-06 | hypothetical protein CHU_0899 [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|Q9FFN2|GLYT3_ARATH | 0 | Probable glycosyltransferase At5g03795 |
| trEMBL | tr|I1NAG9|I1NAG9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G37340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00075 | 357197 | 360305 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000075s00007200.1 | PF03016.10 | Exostosin | 216 | 278 | 7.90E-07 |
| Glyur000075s00007200.1 | PF03016.10 | Exostosin | 303 | 472 | 1.10E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.509 |
| SRR1783600 | control | 2.582 |
| SRR1783602 | moderate drought stress | 4.600 |
| SRR1811619 | moderate drought stress | 4.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.343 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.201 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.352 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.176 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.503 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.267 |
| SRR2967015 | Control (Tissue:root) | 7.679 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.466 |
| SRR9715740 | Leave | 0.081 |
| SRR9715741 | Leave | 0.519 |
| SRR9715739 | Root | 2.594 |
| SRR9715742 | Root | 1.503 |
| SRR9715743 | Root | 1.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.772 |
| SRR8749028 | MeJA induced 9h | 24.698 |
| SRR8749029 | MeJA induced 9h | 37.392 |
| SRR8749030 | Uninduced | 12.400 |
| SRR8749031 | Uninduced | 49.582 |
| SRR8749032 | Uninduced | 37.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.226 |
| SRR8400027 | Control-Root | 7.963 |