Gene detail

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Gene detail information of Glyur000075s00007202.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G53090.2	ubiquitin-protein ligase 7
NR	XP_003553574.1	PREDICTED: E3 ubiquitin-protein ligase UPL7 isoform X1 [Glycine max]
Swissprot	tr\|Q9SCQ2\|UPL7_ARATH	E3 ubiquitin-protein ligase UPL7
trEMBL	tr\|K7MZ55\|K7MZ55_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G37310.6}

Sequence

Transcript Sequence

>Glyur000075s00007202.1
CANAATTAAAAAATGAACGGTCAACTTTTAGCAAAGCAAAAAACTTAAAACACACTTTTCCCTGTTTTGTTTTCTCTTCTTTACCAAACTCGAAATCANAGGAAGTTGCGGTAGAGAGAGCAGAAAACTGCGTGGGAGAAAAAGTAAAGCGGAAGAAGACGATGATAGAATGGGGGATTAACATCGTGGCGTTGACGAGAAGAAGCTAATGGATTTCAGCATTGAGCCTCGCCTCTGTTCCTAATTCCCATGGATGCACCTCGGAAACACCAGGTATCGTTGAGAGGAGCGAGTGCGAAGGAGATAACGCGAGATGACCTTCTTCAGAAGGTCTCACGGGAAAGAGAGCTTCGCAATTATGCAAAACGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTATGGAGNCGCTTCAAGGTTACAAAGATGGTTGCTCTGCAGCTCCAGCAGGAGTGGGAGACATTGGTGAACCATTATACTGGGGTGATGACAGCAATTTGGATTTCAGACAATTTGTTGAGACCATTTCTGTTCTTTATGACCCGTTTCTCAAATCGGTATCAGAAGGTCCATAGCAAGAAAATAGACTCTATGAAGATGTGCTTTACAATCCTATTGGAAAGCCTGAAATCTTCTGATTCAAAACGGAACTTTTGCTTTCTGGCAATTGGTACAACTGAAGAGAGAAGAATTTGGAGTTACCAGGCACGGCAACTGACTTCTCTTGGTTTTTATATTCTTTCAGAGTTTAGTGAATGCAATTCAGGGGCTCAAGATATTACTGTTGTAACATCCCTAGCAATGCGCATTCTTGTTATGTTAACTGATCTGAAAGGATGGAAAGGCATTACAGATGACAACCGCTTAGAGGCAGATTTAGCAGTGAAAGATTTAGTTCAGTTCATGAGGAATAACAAAAGTGGTAGTTATGTTTCTATTGCCAGATATATCAGTGCATTGGATAATTATTCTTCTCAGACAAAAATTATCATCCAGGCAGATGAATTTTTTTTTATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCATTTTATCTGACAAACTTTGATGTAGAAGGGCCTGGTATGCTGGATGTCAACCATGCTGCTAAGCAGTATATTGTATATGTACTGTCTATTCCTTGGCTTGTGAAACATCTTCCACCTGTTCTTCTACCTGCTATAAAGCACAAATCTATTTTGTTCCCATGCTTCCAGACACTATTGATTTTGAAAGAGAATGTTTTAATGGAGATGTCAGAGTTGGTCAAGTCAGAGAATCTTGTCTCTTTCAATGTAATTCCACCAGTTGGTTGGGCTCTCGCTAACTTTATATGCCTAGCAACAGGGAATGGGAATGATTCTGTAGACTCTGGATCCTTCAATCAAGGTTTAGACTGTGCATTGTATGTCCATGTTGTTATCACTCTAGCAGAAAGCCTACTGGCTTGTCTTGATAATATTGGATGGCTCAGGAAGAAGAAGAAATCCCTTCAAACTGATGTTGAAAGTTTANCAAAGCCAGTGGATATGGTTCTGCATGAGGGTGAAGCAACCTATGAATTGTTAATAATGTCATACATTGATCAGTTTAGGCCTGTTTGTCAGCAGTGGCATCTCACAAATCTTCTGGCATCAGTAAATACAGATGCCACTAACAAGGCTGAGACTTCGATCTCAAATAGTNTGGAATATTTGGGGAGGCTGGATTTGTGTGATGTTGCAATTTTTTATTCTAACTTACTTAGAATATTTTCGGTCTTGAGTCCAATTCGTGGTTCATTACCAGTTCTCAACATGCTATCATTTACTCCTGGATTTCTTGTGAGATTGTGGGGAGTACTGGAGGATTCCTATTTCTCTGGAGACAAACATATTTCTGATAATCANACAAGTGAAACTGGAAAACATAAAGCTTTTNAGAAGATGCAAAAACAGGTAAGTAAAGATGGGGCTAACAAGTGGGTCAGCGTACTTCATAAATTTACAGGTAAGTCACAAACTGCAACAGATTGCATAGATCCCATTGGTAGTCACTCTGCACCTAGCACAGTGAATGAGGATCCATCAGATGTNTGGGACATAGAACCTATGAGGCATGGCCCACAAGGCATTCCAAAGAATATGTTTGCTATGCTTCATCTTTTCTGTGCGACCTATTCCCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTATGAGAAACAGGTTCCGTTCAAATTAGAGCAGCAACGAAGAATTGCGTCAATGCTCAATACCCTAGTGTATAATGGCTTGTCCCATGTTAGTGGTCATCATAATATGCCCCTCACGGATTGTGCTGTCAGATGCTTACATTTAATGTATGAAAGGGATTGCAGACACCCATTTTGTCCTCCCGATTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCAGTTGCTGCTAGAACTCATGAAATTTTATCAGCCAACCTGAGATCTGATGATTCATCAGCTTCCCCGAGTGTTGGTTCNGTCATCACTATGATTCCTCATGTTTTCCCGTTTGAAGAGAGAGTTGAGATGTTTCGTGAATTCATCAAGATGGATAAAGCCTCACGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAAATAGTAGTACGTCGGGGTCATATTGTCGAAGATGGATTTCGGCAATTAAATTCCCTTGGGTCGAAGTTGAAGTCATCCATCCATGTATCATTTGTTAGTGAATGTGGCCTTCTGGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACATATCAAAAGCAGCATTTTCCCCCGAATACGGACTTTTTTCCCAAACCTCAACTTCAGACAGGCTCTTAATTCCAACTGCATCTGCAAGATTTTTGGACAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTTGGCAAAGCTCTTTATGAAGGAATATTACTTGATTACTCCTTCTCGCATGTTTTTGTACAAAAGCTATTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAATTATGATGGTGATGTCAAGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTTGGCAANATGCATGTGGTTGAGCTCAAATCTGGTGGCAAAGATATTACTGTGACAAATGAGAGCAAGATGCAGTACATACATGCGATGGCAGACTACAAACTCAACCAACAGATATTGCCCTTTTCAAATGCATTTTATAGAGGGTTATCTGATCTTATATCTCCATCCTGGTTGAAGTTATTCAATGCTAGTGAATTTAATCAGTTGCTTTCAGGTGGCAATTANGATATTGACATTGATGATTTGAAAAATAACACACGGTACACTGGTGGTTACAACGAGGGAAGCCGGACAATCAAGATCTTTTGGGAGGTGATTAAAGGCTTTGAACCAAAAGAGCGTTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCTCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGGTTGCATGTGATGTCCCTCTTTGGGCGACAATTGGAGGACAGGATGTAGAGCGACTTCCATCGGCTTCAACCTGCTATAATACTCTTAAGCTTCCAACATACAANCGTCCAGGCACTTTGAGAACAAAGCTTCTGTATGCTATCAGTTCAAATGCAGGATTTGAACTTTCTTGATTTGCTTCAGGTGGTCAGTATTTTTTGTTGCATGTTCATATTGGAAACAATATTTTCTATTCATTTTAAGCAGTGTGTAAATGCAAATAATGATCATTA

Protein Sequence

>Glyur000075s00007202.1
MDAPRKHQVSLRGASAKEITRDDLLQKVSRERELRNYAKRAAAAALFIQRVWXRFKVTKMVALQLQQEWETLVNHYTGVMTAIWISDNLLRPFLFFMTRFSNRYQKVHSKKIDSMKMCFTILLESLKSSDSKRNFCFLAIGTTEERRIWSYQARQLTSLGFYILSEFSECNSGAQDITVVTSLAMRILVMLTDLKGWKGITDDNRLEADLAVKDLVQFMRNNKSGSYVSIARYISALDNYSSQTKIIIQADEFFFITASAITLAVRPFYLTNFDVEGPGMLDVNHAAKQYIVYVLSIPWLVKHLPPVLLPAIKHKSILFPCFQTLLILKENVLMEMSELVKSENLVSFNVIPPVGWALANFICLATGNGNDSVDSGSFNQGLDCALYVHVVITLAESLLACLDNIGWLRKKKKSLQTDVESLXKPVDMVLHEGEATYELLIMSYIDQFRPVCQQWHLTNLLASVNTDATNKAETSISNSXEYLGRLDLCDVAIFYSNLLRIFSVLSPIRGSLPVLNMLSFTPGFLVRLWGVLEDSYFSGDKHISDNXTSETGKHKAFXKMQKQVSKDGANKWVSVLHKFTGKSQTATDCIDPIGSHSAPSTVNEDPSDVWDIEPMRHGPQGIPKNMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKLEQQRRIASMLNTLVYNGLSHVSGHHNMPLTDCAVRCLHLMYERDCRHPFCPPDLWLSPARKSRPPIAVAARTHEILSANLRSDDSSASPSVGSVITMIPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSKLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQTSTSDRLLIPTASARFLDNGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVKELSLDFTVTEESFGXMHVVELKSGGKDITVTNESKMQYIHAMADYKLNQQILPFSNAFYRGLSDLISPSWLKLFNASEFNQLLSGGNXDIDIDDLKNNTRYTGGYNEGSRTIKIFWEVIKGFEPKERCMLLKFVTSCSRAPLLGFKYLQPPFTIHKVACDVPLWATIGGQDVERLPSASTCYNTLKLPTYXRPGTLRTKLLYAISSNAGFELS

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00075	371766	380060	+

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10588	UBE3B	EC:2.3.2.26	Ubiquitin mediated proteolysis	map04120

Gene Ontology

molecular_function
GO:0004842 ubiquitin-protein transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000075s00007202.1	PF00632.20	HECT	849	1162	1.40E-88

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.171
SRR1783600	control	13.158
SRR1783602	moderate drought stress	13.188
SRR1811619	moderate drought stress	13.120

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.028
DRR006520	Root Summer glycyrrhizin high producing strain	13.752
DRR006521	Root Winter glycyrrhizin high producing strain	12.738
DRR006522	Root Winter glycyrrhizin high producing strain	12.404
DRR006523	Root Summer glycyrrhizin low producing strain	12.145
DRR006524	Root Summer glycyrrhizin low producing strain	12.167
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.554
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.564

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	33.763
SRR2868004	Drought Stress(Tissue:root)	40.735
SRR2967015	Control (Tissue:root)	38.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	15.837
SRR9715740	Leave	20.278
SRR9715741	Leave	17.595
SRR9715739	Root	3.534
SRR9715742	Root	13.487
SRR9715743	Root	11.636

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.979
SRR8749028	MeJA induced 9h	17.813
SRR8749029	MeJA induced 9h	10.187
SRR8749030	Uninduced	19.685
SRR8749031	Uninduced	19.367
SRR8749032	Uninduced	13.649

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	32.932
SRR8400027	Control-Root	32.128