Gene detail information of Glyur000076s00018599.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56560.1 | 4.00E-19 | FBD, F-box and Leucine Rich Repeat domains containing protein |
| NR | KEH15851.1 | 3.76E-49 | F-box/RNI/FBD-like domain protein, partial [Medicago truncatula] |
| Swissprot | tr|Q8LF09|FDL23_ARATH | 2.00E-23 | F-box/FBD/LRR-repeat protein At4g00160 |
| trEMBL | tr|A0A072TF93|A0A072TF93_MEDTR | 1.00E-49 | F-box/RNI/FBD-like domain protein {ECO:0000313|EMBL:KEH15851.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00076 | 132920 | 149858 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000076s00018599.1 | PF00646.28 | F-box | 80 | 112 | 6.60E-05 |
| Glyur000076s00018599.1 | PF07723.8 | LRR_2 | 226 | 251 | 2.50E-05 |
| Glyur000076s00018599.1 | PF07723.8 | LRR_2 | 445 | 470 | 1.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.045 |
| SRR1783600 | control | 8.137 |
| SRR1783602 | moderate drought stress | 11.626 |
| SRR1811619 | moderate drought stress | 11.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.655 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.452 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.304 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.503 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.904 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.047 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.213 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.758 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.161 |
| SRR2967015 | Control (Tissue:root) | 7.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.494 |
| SRR9715740 | Leave | 4.096 |
| SRR9715741 | Leave | 1.307 |
| SRR9715739 | Root | 3.555 |
| SRR9715742 | Root | 1.716 |
| SRR9715743 | Root | 1.569 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.298 |
| SRR8749028 | MeJA induced 9h | 6.552 |
| SRR8749029 | MeJA induced 9h | 5.149 |
| SRR8749030 | Uninduced | 1.822 |
| SRR8749031 | Uninduced | 1.053 |
| SRR8749032 | Uninduced | 1.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.245 |
| SRR8400027 | Control-Root | 8.831 |