Gene detail information of Glyur000076s00018601.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52680.2 | 1.00E-24 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | XP_003532284.2 | 4.83E-126 | PREDICTED: uncharacterized protein LOC100780535 [Glycine max] |
| Swissprot | tr|Q9FM94|FBD21_ARATH | 2.00E-34 | FBD-associated F-box protein At5g56370 |
| trEMBL | tr|A0A072VGV2|A0A072VGV2_MEDTR | 4.00E-95 | Cyclin-like F-box protein {ECO:0000313|EMBL:KEH41042.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00076 | 153682 | 164568 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000076s00018601.1 | PF00646.28 | F-box | 14 | 45 | 0.00011 |
| Glyur000076s00018601.1 | PF07723.8 | LRR_2 | 158 | 183 | 6.80E-05 |
| Glyur000076s00018601.1 | PF08387.5 | FBD | 298 | 347 | 2.60E-13 |
| Glyur000076s00018601.1 | PF00646.28 | F-box | 408 | 439 | 4.70E-05 |
| Glyur000076s00018601.1 | PF07723.8 | LRR_2 | 552 | 573 | 0.0029 |
| Glyur000076s00018601.1 | PF08387.5 | FBD | 692 | 741 | 2.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.076 |
| SRR1783600 | control | 18.612 |
| SRR1783602 | moderate drought stress | 30.559 |
| SRR1811619 | moderate drought stress | 30.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.238 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.379 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.639 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.743 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.087 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.183 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.182 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.358 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.067 |
| SRR2967015 | Control (Tissue:root) | 10.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.305 |
| SRR9715740 | Leave | 10.362 |
| SRR9715741 | Leave | 4.885 |
| SRR9715739 | Root | 9.970 |
| SRR9715742 | Root | 4.528 |
| SRR9715743 | Root | 5.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.374 |
| SRR8749028 | MeJA induced 9h | 12.872 |
| SRR8749029 | MeJA induced 9h | 8.886 |
| SRR8749030 | Uninduced | 3.797 |
| SRR8749031 | Uninduced | 3.385 |
| SRR8749032 | Uninduced | 3.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.371 |
| SRR8400027 | Control-Root | 24.263 |