Gene detail information of Glyur000076s00018610.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G56370.2 | 1.00E-30 | F-box/RNI-like/FBD-like domains-containing protein |
| NR | KEH41042.1 | 3.14E-97 | cyclin-like F-box protein [Medicago truncatula] |
| Swissprot | tr|Q9FM94|FBD21_ARATH | 1.00E-36 | FBD-associated F-box protein At5g56370 |
| trEMBL | tr|A0A072VGV2|A0A072VGV2_MEDTR | 1.00E-97 | Cyclin-like F-box protein {ECO:0000313|EMBL:KEH41042.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00076 | 216325 | 217786 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000076s00018610.1 | PF00646.28 | F-box | 42 | 78 | 5.30E-07 |
| Glyur000076s00018610.1 | PF07723.8 | LRR_2 | 188 | 213 | 5.40E-05 |
| Glyur000076s00018610.1 | PF08387.5 | FBD | 328 | 377 | 1.10E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.557 |
| SRR1783600 | control | 32.472 |
| SRR1783602 | moderate drought stress | 40.598 |
| SRR1811619 | moderate drought stress | 40.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.022 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.765 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.681 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.326 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.706 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.299 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.529 |
| SRR2967015 | Control (Tissue:root) | 23.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.012 |
| SRR9715740 | Leave | 4.775 |
| SRR9715741 | Leave | 9.132 |
| SRR9715739 | Root | 7.581 |
| SRR9715742 | Root | 8.747 |
| SRR9715743 | Root | 8.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.413 |
| SRR8749028 | MeJA induced 9h | 10.964 |
| SRR8749029 | MeJA induced 9h | 9.903 |
| SRR8749030 | Uninduced | 2.736 |
| SRR8749031 | Uninduced | 1.892 |
| SRR8749032 | Uninduced | 2.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.389 |
| SRR8400027 | Control-Root | 27.647 |