Gene detail information of Glyur000077s00006678.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G21060.17.00E-25glycine-rich protein 2B
NRXP_004505774.13.75E-57PREDICTED: glycine-rich protein 2-like [Cicer arietinum]
COGYP_003409330.11.00E-10cold-shock DNA-binding domain-containing protein [Geodermatophilus obscurus DSM 43160]
Swissprottr|Q38896|CSP4_ARATH2.00E-41Cold shock domain-containing protein 4
trEMBLtr|A0A088FZS5|A0A088FZS5_CICAR1.00E-57Cold shock protein {ECO:0000313|EMBL:AIM56894.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000775225452871-


Gene family

Gene familysubfamily
Transcription Factors FamilyCSD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000077s00006678.1PF00313.17CSD6703.70E-25
Glyur000077s00006678.1PF00098.18zf-CCHC1501652.30E-07
Glyur000077s00006678.1PF00098.18zf-CCHC1862021.00E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control133.006
SRR1783600control127.113
SRR1783602moderate drought stress136.096
SRR1811619moderate drought stress166.364

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain238.033
DRR006520Root Summer glycyrrhizin high producing strain340.205
DRR006521Root Winter glycyrrhizin high producing strain227.365
DRR006522Root Winter glycyrrhizin high producing strain215.150
DRR006523Root Summer glycyrrhizin low producing strain242.490
DRR006524Root Summer glycyrrhizin low producing strain336.249
DRR006525Leaf Summer glycyrrhizin high producing strain111.337
DRR006526Leaf Summer glycyrrhizin high producing strain110.089

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)900.872
SRR2868004Drought Stress(Tissue:root)622.646
SRR2967015Control (Tissue:root)714.724

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave108.559
SRR9715740Leave148.741
SRR9715741Leave165.128
SRR9715739Root292.684
SRR9715742Root245.719
SRR9715743Root318.368

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1021.986
SRR8749028MeJA induced 9h394.609
SRR8749029MeJA induced 9h725.678
SRR8749030Uninduced208.032
SRR8749031Uninduced188.874
SRR8749032Uninduced228.367

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root570.590
SRR8400027Control-Root605.443

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved